Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4 107 1e-18 seq12 102 6e-17 seq1 93.3 3e-14 seq3 86.0 4e-12 seq16 84.2 2e-11 >seq4 Length=178899001 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| ||| | ||||| || || || |||| ||||||||| || Sbjct 81196315 ATGCAAATCTTTGTGAAGACTTTGACTGGTAAGACCATCACCCTTGAGGTCGAAAGCTCC 81196256 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || ||| |||| |||||| ||| || ||||| || ||| | || | Sbjct 81196255 GA-----TACCATCGATAACGTCAAAGCAAAGATTCAAGACAAGGAGGGTATCCCACCAG 81196201 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || ||||| || |||||||| |||| |||| |||| |||||| Sbjct 81196200 ACCAGCAGCGTCTGATCTTCGCCGGTAAGCAATTGGAAGACGGCCGCACCTTGGCCGATT 81196141 Query 27965 ACAACATCCAAAAAGAG 27981 ||||||||||||| ||| Sbjct 81196140 ACAACATCCAAAAGGAG 81196124 >seq12 Length=166489593 Score = 102 bits (112), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || || |||||||| || || || || || || | || |||||| | Sbjct 157664244 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACGATCACGTTGGAGGTCGAATCC 157664185 Query 27847 ACCGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| ||| |||| || || ||| || ||||| ||||| |||| || Sbjct 157664184 TCCGACACGATCGACAAC--GTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCACCGG 157664127 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||||||| ||||||| ||||||||||| | || |||| | | | | | |||| Sbjct 157664126 ACCAGCAACGGCTAATTTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCTAGCGGATT 157664067 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| ||| ||||| |||| ||||| | ||||| || Sbjct 157664066 ACAACATCCAGAAGGAGTCGACTCTGCATCTGGTGTTGCGGCTTCGTGGTGG 157664015 >seq1 Length=153905722 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| || || || || || || |||| || || || | Sbjct 17864346 ATGCAGATCTTTGTTAAAACGCTCACCGGAAAGACAATCACTCTTGAAGTAGAGAGTTCT 17864405 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| |||||| ||||| |||||||||||| |||| || | Sbjct 17864406 GACATGATCGACAAT--GTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGACC 17864463 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || |||||||| ||| | || || | | | |||| | ||||||| Sbjct 17864464 AGCAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGATGGCAGAACCTTGGCGGATTACA 17864523 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| |||| | ||| |||| | ||| | ||||| || Sbjct 17864524 ACATCCAGAAGGAGTCCACTCTTCATCTGGTCCTCCGTCTCCGTGGAGG 17864572 >seq3 Length=168485022 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/235 (68%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || ||||| ||||| || || || ||| || || | || ||||||||| Sbjct 118896082 AACATGCAGATCTTTGTCAAAACCCTAACCGGAAAAACAATCACTCTAGAAGTCGAAAGC 118896023 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||||| ||||||| |||||| || || ||||||||||| | || Sbjct 118896022 TCCGAC-----ACAATCGACAACGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCAC 118895968 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 ||| || ||||| | || || ||||||||||| | || || | | | | | ||| Sbjct 118895967 CGGATCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGAGGGCAGAACCCTAGCCG 118895908 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||||||||| ||| | || | ||| | ||| | || ||||| Sbjct 118895907 ATTACAACATCCAAAAAGAATCCACCCTTCACCTCGTTCTTCGTCTCCGCGGCGG 118895853 >seq16 Length=188620566 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || |||||||| || || || || || |||| || || ||| | Sbjct 29321962 ATGCAGATCTTCGTCAAAACTCTCACCGGAAAGACAATCACCCTTGAAGTTGAGAGCTCT 29321903 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| ||||| ||||| |||||| |||| ||| | Sbjct 29321902 GACACCATTGACAAT--GTCAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCGGACC 29321845 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || || ||||| || | || || | || | |||| ||||||||| Sbjct 29321844 AGCAGAGGCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACCTTGGCCGATTACA 29321785 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || |||| |||| | ||| | || ||| | || || Sbjct 29321784 ACATCCAGAAGGAATCCACTCTGCACCTTGTTCTCCGGTTGAGAGGAGG 29321736 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/233 (68%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || ||||| || ||||| || || || | || ||||| || || Sbjct 106905985 ATGCAGATCTTCGTCAAAACCCTAACTGGCAAGACAATCACTCTCGAGGTCGAGAGTTCC 106906044 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| ||||| ||||| ||||| ||||| |||| | Sbjct 106906045 GAC-----ACAATCGACAACGTCAAGGCGAAAATCCAAGACAAGGAAGGAATTCCCCCAG 106906099 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || || ||||||||| | || |||| |||| | |||| | Sbjct 106906100 ACCAGCAGAGGCTCATCTTCGCTGGAAAACAACTCGAAGACGGTCGCACTCTCGCCGACT 106906159 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||||| ||| |||| | || ||||| | ||| | ||||| ||| Sbjct 106906160 ACAACATCCAAAAGGAGTCCACTCTCCACTTGGTCCTCCGTCTCCGTGGTGGC 106906212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355855772952456