Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq17 104 2e-17 seq4 96.9 3e-15 seq11 95.1 1e-14 seq8 95.1 1e-14 seq15 87.8 2e-12 seq1 86.0 5e-12 >seq17 Length=214723238 Score = 104 bits (114), Expect = 2e-17 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||||||||||||| ||||| ||| || || || || || || || || |||| || Sbjct 210026234 CGTAACACCAAATGGAGCGTTGACTCCTTCTGGATGTTGTAGTCCGCTAGGGTTCTGCCG 210026293 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188 || || |||||||| || || || || || |||||||||| ||||||| | || ||||| Sbjct 210026294 TCTTCGAGCTGTTTTCCGGCGAAGATGAGCCGCTGCTGGTCCGGTGGG-ATGCCTTCTTT 210026352 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||| ||| || || | ||| | | | || ||| || || || |||| ||| | Sbjct 210026353 GTCTTGGATCTTGGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCGACCTCCAACGTTA 210026411 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || ||||| || ||||| || ||||| |||||||| Sbjct 210026412 TCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 210026451 >seq4 Length=178899001 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||| ||| || || ||| ||||| || || ||||| ||||| || | |||| Sbjct 81195876 AACACCAGATGCAGAGTCGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTGCCGTCT 81195935 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTC 39191 || | |||||| |||||||| || || | ||||||||| |||||| | | ||| ||||| Sbjct 81195936 TCCAACTGTTTACCCGCAAAGATGAGCCTCTGCTGGTCCGGTGGG-ATACCCTCCTTGTC 81195994 Query 39192 CATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATAC 39250 | ||| || ||| | ||| | | | || ||| ||| || |||| ||||| Sbjct 81195995 CTGGATCTTTGCTTTCA-CGTTGTCGATAGTGTCGGAGCTCTCGACCTCCAAGGTGATGG 81196053 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || ||||||||||||||||| Sbjct 81196054 TCTTACCGGTCAAGGTCTTAACAAAGATTTGCAT 81196087 >seq11 Length=168460249 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| ||||| ||| || || || |||||||| || | || || | ||||| Sbjct 109718082 CACAAGATGAAGCGTAGACTCCTTCTGGATGTTATAATCCGCCAAAGTACGACCATCATC 109718141 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | |||||| || ||||| || | ||||||||||| | || | || |||||| ||| Sbjct 109718142 TAACTGTTTTCCGGCAAAGATCAACCGCTGCTGGTCTGGCGGGATGCCCTCTTTATCCTG 109718201 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACT 39251 || || |||| | | | ||||| ||| |||||| |||| ||||||| | Sbjct 109718202 AATCTTGGCCTTGACGTTATCGATAGTATC---CGAACTCTCCACCTCCAACGTGATAGT 109718258 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||||| ||||| || || ||||| ||||||||| Sbjct 109718259 CTTTCCGGTCAGGGTCTTCACAAATATTTGCATC 109718292 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/197 (72%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || |||||||| ||||| || || | ||||| | ||||| |||||||| Sbjct 109471810 CTCTTTCTGAATGTTATAATCAGCAAGAGTCCGACCATCATCCAATTGTTTACCCGCAAA 109471869 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGC 39210 || | ||||||||||| |||||| | | |||||||||| ||| ||| || |||| Sbjct 109471870 GATTAACCGCTGCTGGTCAGGTGGG-ATCCCCTCTTTGTCC-TGAATTTTTGCCTTGACA 109471927 Query 39211 GTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTT 39267 | | || ||||| ||| |||||| |||| ||||| | || ||||| | || Sbjct 109471928 TTATCAACAGTATC---CGAACTCTCCACTTCCAGAGTGATCGTCTTCCCCGTTAAGGTC 109471984 Query 39268 TTAACAAAGATTTGCAT 39284 || || || || ||||| Sbjct 109471985 TTGACGAATATCTGCAT 109472001 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || |||||||| ||||| || || | ||||| | ||||| |||||||| Sbjct 109717470 CTCTTTCTGAATGTTATAATCAGCAAGAGTCCGACCATCATCCAATTGTTTACCCGCAAA 109717529 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCG 39211 || | ||||||||||||| || | | |||||||||| ||| ||| || |||| Sbjct 109717530 GATTAACCGCTGCTGGTCGGGCGGGATCCCCTCTTTGTCC-TGAATTTTTGCCTTGACAT 109717588 Query 39212 TCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTT 39268 | | || ||||| ||| ||| || || | ||||| | || ||||||| || | Sbjct 109717589 TATCAACAGTATC---CGAACTCTCGACCTCTAGAGTGATCGTCTTCCCCGTCAAGGTCT 109717645 Query 39269 TAACAAAGATTTGCATC 39285 | || || || |||||| Sbjct 109717646 TGACGAATATCTGCATC 109717662 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/214 (69%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| ||||| ||| || || || |||||||| || | || || | ||||| Sbjct 109472740 CACAAGATGAAGCGTAGACTCCTTCTGGATGTTATAATCCGCCAAAGTACGACCATCATC 109472799 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | |||||| || ||||| || | ||||||||||| | || | || |||||| ||| Sbjct 109472800 CAACTGTTTTCCGGCAAAGATCAACCGCTGCTGGTCCGGCGGGATGCCCTCTTTATCCTG 109472859 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA---CTCCACGTCCACCGTGATACT 39251 || || |||| | | | ||||| ||| |||| | |||| ||||||| | Sbjct 109472860 AATCTTGGCCTTGACGTTATCGATGGTATC---CGAACTCTCCTCCTCCAACGTGATAGT 109472916 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||||| || || || || ||||| ||||||||| Sbjct 109472917 CTTTCCGGTGAGGGTCTTCACAAATATTTGCATC 109472950 >seq8 Length=153252196 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || || ||||| || |||| |||| ||||||||||| || || || Sbjct 2509495 CTCTTTCTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCTTCAAGCTGTTTTCCGGCGAA 2509436 Query 39153 TATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || |||||||| |||| ||||||| | || || |||| | ||| | | | | || Sbjct 2509435 GATGAGACGCTGTTGGTCCGGTGGG-ATGCCTTCCTTGT-CTTGAATCTTGGCCTTCACG 2509378 Query 39212 TCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | | | ||| ||| || ||||| |||| ||||| | || ||||| || ||||| Sbjct 2509377 TTGTCGATCGTGTCGGAGGATTCCACCTCCAATGTGATCGTCTTACCCGTTAGGGTTTTC 2509318 Query 39271 ACAAAGATTTGCATCTTTACGCCGA 39295 || ||||| ||||| || |||||| Sbjct 2509317 ACGAAGATCTGCATTTTCTCGCCGA 2509293 >seq15 Length=171247636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| || || || ||||| ||||||||||| || ||| | || || Sbjct 26151414 CACCAAATGGAGGGTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTGCGTCCATCCTC 26151473 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 |||||| || || ||||| || || | ||| ||||| |||||| | | |||||||||| Sbjct 26151474 AAGCTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGG-ATCCCCTCTTTGTCCT 26151532 Query 39194 TGATTTT 39200 ||| || Sbjct 26151533 GGATCTT 26151539 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | ||| | ||||||||| || ||| ||||| || || || ||||| || Sbjct 26151625 CCACCTCTGAGGCGGAGCACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCTGCC 26151684 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | || || |||| |||||||| || || ||||| || || | ||| ||||| |||||| Sbjct 26151685 AAAGTACGACCGTCCTCAAGCTGCTTACCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGG 26151744 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | ||||||||| ||| || ||| | | | | |||||| || || Sbjct 26151745 ATCCC-CTCTTTGTCTTGGATCTTGGCTTTAACATTGTCGATGGTATCGGAACTTTCAAC 26151803 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || || || || || || |||||||||||| Sbjct 26151804 TTCCAATGTGATCGTCTTCCCGGTGAGAGTCTTGACGAAGATTTGCATC 26151852 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAA-CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||||| |||| | | ||| | ||| |||||| ||| || || || || || || || Sbjct 26151853 CCTCCTCT-AAGCCTGAGCACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCTGC 26151911 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 | || || |||| ||||||||||| || ||||| ||||| | ||||||||| ||||| Sbjct 26151912 CAAAGTACGGCCGTCTTCAAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGG 26151971 Query 39176 GCACGCTCTCTTTGTCC 39192 | | || ||||||||| Sbjct 26151972 G-ATGCCTTCTTTGTCC 26151987 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | ||| | ||||| ||| || ||| ||||| || || || ||||| || Sbjct 34231414 CCACCTCTGAGGCGGAGCACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGCC 34231355 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | || || | || ||||||||||| || ||||| || | | ||| ||||| |||||| Sbjct 34231354 AAGGTACGACCATCCTCAAGCTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGG 34231295 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | ||||||||| ||| || ||| | | | | |||||| || || Sbjct 34231294 -ATCCCCTCTTTGTCTTGGATCTTGGCTTTAACATTGTCGATGGTATCGGAACTTTCAAC 34231236 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || || || || || ||||||||||||||| Sbjct 34231235 TTCCAATGTGATCGTCTTCCCGGTGAGAGTCTTGACAAAGATTTGCATC 34231187 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | ||| | ||||| ||| || ||| ||||| || || || ||||| || Sbjct 34348817 CCACCTCTGAGGCGGAGCACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAATCTGCC 34348758 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | || || | || ||||||||||| || ||||| || | | ||| ||||| |||||| Sbjct 34348757 AAAGTACGACCATCCTCAAGCTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGG 34348698 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | ||||||||| ||| || ||| | | | | |||||| || || Sbjct 34348697 -ATCCCCTCTTTGTCTTGGATCTTGGCTTTAACATTGTCGATTGTATCGGAACTTTCAAC 34348639 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || || || || || || ||||||||||||||| Sbjct 34348638 TTCCAATGTGATCGTCTTCCCAGTGAGAGTCTTGACAAAGATTTGCATC 34348590 >seq1 Length=153905722 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || | | ||||||||| ||||| || || || || |||||||| || Sbjct 17865028 CCACCTCTCAACCTCAGCACCAAATGAAGCGTAGATTCCTTCTGAATGTTATAATCCGCC 17864969 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 | || || | || || |||||||| || ||||| || || | ||| ||||| |||||| Sbjct 17864968 AAAGTCCGCCCATCTTCCAGCTGTTTACCGGCAAAGATCAGCCTCTGTTGGTCTGGTGGG 17864909 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGA---CT 39232 | || ||||| || ||| | | || |||| | | | |||||| ||| || Sbjct 17864908 ATCCCT-TCTTTATCT-TGAATCTTTGCCTTGACATTGTCAATCGTATC---CGAGCTCT 17864854 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || | ||||| | ||||| |||| ||| ||||||||||| ||||| Sbjct 17864853 CAACTTCAAGAGTGATGGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCAT 17864802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429537600787064