Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq15 149 5e-31 >seq15 Length=171247636 Score = 149 bits (164), Expect = 5e-31 Identities = 409/621 (66%), Gaps = 7/621 (1%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603 || || || ||||| ||||||||||| ||||||| || | |||| ||||| || ||||| Sbjct 39549703 AAGCAAGCGAAATCGCAATGCAAACCCTCGTCTC-GCGATATCAACTCGTTCGAGAACGT 39549761 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 ||| || ||||| || || | ||| || | ||| || ||||| ||| |||||||| Sbjct 39549762 TAAACCCGGCATCAACCCACGCTTCTTCAACCAGAAAATAGCACAAAAGCTACCAGAAAA 39549821 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 |||||| ||||| || |||||| || | || || | ||||| || | Sbjct 39549822 GAATATTCCTTCAACACAGGCAAAGGCAATTATTCTCTCTGCAAACGA---TTCTGAACC 39549878 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | ||||| || | ||||| || || ||||||| || || || ||||| | ||||| Sbjct 39549879 GTCGATCCACTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTCTCAATAGC 39549938 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || || ||||||||| | |||| || || | || | || | || || Sbjct 39549939 ACGGAACAAACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGCAAACTGTA 39549998 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 ||||||||| || ||||| || || || || ||||| ||||||||| | || || | Sbjct 39549999 CATTTCAGAGTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACGCGCCTCGGA 39550058 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | || ||||| || || | | | | |||||| ||| || ||||| || Sbjct 39550059 GATCTGTACTTCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATGCCGTCTGATGC 39550118 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCG-TCAGGCTTAAGTTTTTTCC 5022 || || || || | || |||| || |||| ||||| | | ||||| | || Sbjct 39550119 AGCGAAGAAGGCGAGTACGTGAGTAATGAAGTGACGTTCGTTGTCGGTTAAG-GAGTCCC 39550177 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 |||| | |||| | ||| || |||||||| | ||||| || || ||||| || | Sbjct 39550178 AGTGTTGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGAGGCTTCGGCCT 39550237 Query 5083 TTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGT 5142 |||||||||| ||| || | || || || || || | ||| ||||||| | || Sbjct 39550238 TTTTGTACATTTCCCAGATTTGTGGGTATTGGATTGGGAACATGCAGAATCTGTCGGGGT 39550297 Query 5143 TAGGTGTAAGAAGCGGTTCTT 5163 | || || || | || |||| Sbjct 39550298 TTGGGGTTAGGATTGGGTCTT 39550318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427041647268824