Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq15 199 5e-46 seq14 197 2e-45 seq9 98.7 1e-15 >seq15 Length=171247636 Score = 199 bits (220), Expect = 5e-46 Identities = 577/878 (66%), Gaps = 24/878 (3%) Strand=Plus/Plus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || ||||| || || || | ||||| |||||||| || || || | ||| || || Sbjct 39549415 TTCTGATACTCCCCAACCCTCTTCTCAAAAAAATTCGTCTTCCCCTGCAACGAAATCAAC 39549474 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| ||||||| ||||| | ||| | ||| | | ||||||| | | Sbjct 39549475 TCCATCCAATCAAACGGATTCGACACGCCATACAATTTCTCACATCCTAACGACCCCAGC 39549534 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 | ||||| ||||| || || ||||| |||||| ||| |||||| || | | Sbjct 39549535 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACCCACCATTCATCCCAACCAAC 39549594 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 | |||| || || || |||||| || || || |||||| | | ||| Sbjct 39549595 CCACAGGGTAAGGCATCACAAACAAACTCCCTCTCAATCTCCACCGCATCCGCCACAATC 39549654 Query 48090 GATGTTACCGTTTCCTCACTTGG---TGGATACAACAAATGTTTAAACATTAAACATGCA 48146 | | ||| |||||||| || || |||||| | || ||| || || || Sbjct 39549655 CCTTTCACCCGCTCCTCACTCAACTTTGTATTCAACAACT---TATACAGCAAGCAAGCG 39549711 Query 48147 AAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGC 48206 ||||| ||||| | ||| || |||| || || ||||| || || || | ||| ||| Sbjct 39549712 AAATCGCAATGCAAACCCTCGTCTCGCGATATCAACTCGTTCGAGAACGTTAAACCCGGC 39549771 Query 48207 ATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATATGCC 48265 || | ||||| || || | ||| || || || | |||| | |||||||||||||| || Sbjct 39549772 ATCAACCCACGCTTCTTCAACCAGAAAATAGCA-CAAAAGCTACCAGAAAAGAATATTCC 39549830 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT---GTGTATCCA 48322 ||| || ||||| || | | ||||||| | ||| | ||| || ||||| Sbjct 39549831 TTCAACACAGGCAAAGGCAATTATTCTCTCTGCA-AAC--GATTCTGAACCGTCGATCCA 39549887 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 | ||||||| ||||| |||| |||||| || ||||| || |||||| || | Sbjct 39549888 CTTCATCGCCCAATTCGCCTTTTTCTGTACACATGGTATTGTCTCAATAGCACGGAACAA 39549947 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 | |||||||||| |||||| | ||| | || | | | ||| |||||||| || Sbjct 39549948 ACGGTTTTTTTCAACAGAATCTTTGATGTACGATTCCAACAGCAAACTGTACATTTCAGA 39550007 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 ||| ||||| ||||| || || ||||| |||||||| | ||| || | ||||||||| Sbjct 39550008 GTGGATATTCTCAATCGCGATTTGAAAGCCGTAAAAGGCACGCGCCTCGGAGATCTGTAC 39550067 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || | || || |||| | || || ||| || || || ||||| || || Sbjct 39550068 TTCTTTCATGAAGCGGCCAGCGAGGTTTTCCAATACAATGCCGTCTGATGCAGCGAAGAA 39550127 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA----TTCCAGTCAT 48618 || | ||| || |||| || | ||||||| || ||| | | ||||| | Sbjct 39550128 GGCGAGTACGTGAGTAATGAAGTGACGTTCGTTG----TCGGTTAAGGAGTCCCAGTG-T 39550182 Query 48619 TGATA-TCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 || | |||| ||||| || |||||||| || ||||| ||||| || || || ||||| Sbjct 39550183 TGTTGGTCTTGTGATAAGTCGACTTCTTCTGCGGTCCAGAATGAGGCTTCGGCCTTTTTG 39550242 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 ||||| | ||| || | ||||||||||||||| || Sbjct 39550243 TACATTTCCCAGATTTGTGGGTATTGGATTGGGAACAT 39550280 Score = 105 bits (116), Expect = 9e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||||| || || | ||| | || | || |||||| ||||| || Sbjct 145647815 ACCTCCTTGGTCAACATATCGAGCAGTATCGTTAAAGACACGCAGCATTGGGATAATGCC 145647874 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| || ||||||||| ||| || |||||| ||| || Sbjct 145647875 ATTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAATAGA 145647934 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || ||||| ||||| || || | ||| || ||||| |||||||| || Sbjct 145647935 GACACCAATTCCACCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTATCGTATAT 145647994 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| || || || || ||||| | || ||||||||| Sbjct 145647995 GCCCTCAATGCTATCGTCTTTCATGCATAACAGGAAACAGCTA 145648037 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || |||||||| |||| || ||||| ||||| || ||||| | | || | | || Sbjct 145648153 GTCCCTGCATTGAATAGGGTGGGAGAAGCATGAGTGAACCACCTCTGTGACATCAAATGA 145648212 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || || | || | || || ||||| || ||||| || |||| || | ||||||| Sbjct 145648213 TAAGTCTTGATTACCGAATCAATGTCATCTTTGTGAATCCCAACCGAAACCCTCATCAAC 145648272 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 ||||| |||||||||||||| ||| || ||||| | ||||| | || | Sbjct 145648273 ATATGTTGAGGTCTTTCAACAACCTTCCCTCCAATCTTCAATAGATATGACCTCTCAAGG 145648332 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||||||||||||||| | || |||||| | ||||| ||||| Sbjct 145648333 GTTTTAAAACCAAAATAATCATAATCAAAGTCCCGATCGTATATAAT 145648379 >seq14 Length=174509413 Score = 197 bits (218), Expect = 2e-45 Identities = 396/584 (68%), Gaps = 6/584 (1%) Strand=Plus/Minus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 || || || || ||||| || || | ||||||||||| ||||||||||| || ||| Sbjct 142133087 ATCAAGCACGCGAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAAT 142133028 Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA 48254 || || || ||||||| || || ||||| ||||| ||||| || ||| ||| || Sbjct 142133027 GTCAGTCCCGGCATTAACCCGCGCTTTTTCAGCCAGAATATCGCACAGAAGCTTCCTGAG 142132968 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG--- 48311 |||||||| ||||| ||| ||||| || | | | |||| | ||| | |||| Sbjct 142132967 AAGAATATTCCTTCGACGCAGGCAAAAGCAATGATCCGCTCTGC-AAAC--GATTCGGAT 142132911 Query 48312 TTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATA 48371 || ||||| | ||||||| || ||||||| | || || || ||||| || Sbjct 142132910 CCGTCGATCCATTTCAGCGCCCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAATC 142132851 Query 48372 GCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTA 48431 || ||| ||| || |||||| || |||||| | ||| | || | ||| ||||| Sbjct 142132850 GCGCGAAATAGACGATTCTTTTCAGTGGAATCTTTGATGTAGGATTCGAGTAACAGACTG 142132791 Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 ||||| |||||||| || |||||||| || || ||||| ||||| || | ||| || Sbjct 142132790 TACATCTCGGAGTGGATGTTTTCAATGGCGATTTGAAAGCCGTAGAACGCACGCGCCTCG 142132731 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 | |||||| || ||| | ||||| | || | || || || || || || | Sbjct 142132730 GCGATCTGGACTTCCTTCATGAATCGGCCGGCGAGGTTTTCGAGGACGATGCCGTCTGAA 142132671 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTC 48611 || || || || || | || || | || || | |||| | || || | | | Sbjct 142132670 GCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTTAGGGTTTCC 142132611 Query 48612 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 || | | | |||| ||| | ||||||||||| |||||||| ||||| ||||| ||| Sbjct 142132610 CATTGACGGTGGTCTTGTGAGAGGTCTACTTCTTCTGCTGTCCAGAATGAGGCCTCGGCT 142132551 Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 ||||| ||||| | ||| || | ||||||||||||||| || Sbjct 142132550 TTTTTGTACATTTCCCAGATTTGGGGGTATTGGATTGGGAACAT 142132507 >seq9 Length=209865144 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || |||||||| || | || ||||| ||||| || ||||| ||| || | | || Sbjct 123174741 GTCCCTGCATTGAAGAGGGTGGGAGAAGCATGTGTGAACCACCTTTGTGACATCAAATGA 123174800 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || || | || | || || ||||| || ||||| || || || || | ||||| | Sbjct 123174801 TAAGTCTTGATGACAGAATCAATGTCATCTTTGTGAATCCCAACTGCAACCCTCATCAGC 123174860 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 ||||| ||||||||||| || ||| || || ||||||| ||||||| | || | Sbjct 123174861 ATATGTTGAGGTCTTTCCACAACCTTCCCTTTGATCTTCAACAGGTATGATCTCTCAAGT 123174920 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||||| |||||||| | || |||||| | ||||| || || Sbjct 123174921 GTTTTAAAGCCAAAATAATCATAATCAAAGTCCCGATCGTATATGAT 123174967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694655531825920