Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq14 145 1e-29 seq15 136 6e-27 seq9 109 8e-19 >seq14 Length=174509413 Score = 145 bits (160), Expect = 1e-29 Identities = 559/872 (64%), Gaps = 12/872 (1%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || || || || || || | ||||| |||||||| || || || | ||| ||||| Sbjct 142133372 TTCTGATACTCCCCAACCCTCTTCTCAAAAAAATTCGTCTTCCCCTGCAACGATATCAAC 142133313 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| |||||||||| || |||| ||| | || | | || || | | | Sbjct 142133312 TCCATCCAATCAAACGGGTTCTGCACATCATACAACTTCCCATACCCCAACGCATTCAAC 142133253 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | | ||| || || || ||||| ||||| |||||| | | |||||| || | | Sbjct 142133252 AACCGATCCGCCACAAACTCTATGTACGTACTCATCAAACCCCCATTCATCCCCACCAAC 142133193 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 ||| | || || | |||||| | ||||| || ||||||| | ||| Sbjct 142133192 CCACACGGCAACGCATCACACACAAACTCCCGCTCAATCTCCACCGCATCCGCCACAATC 142133133 Query 46579 GATGTTACTGTTTCCTCACTTGG-TGGATG--CATCAAA-TGTTTAAACATTAAACATGC 46634 | | ||| ||||| || | | || || |||| ||| | || || || || Sbjct 142133132 GCCTTCACTCGCTCCTCGGTTAGCTTCATCTTCAACAAACTGT----AGATCAAGCACGC 142133077 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 ||||| || || | |||||||||| ||||||||||| || ||||| || || || Sbjct 142133076 GAAATCGCAGTGTAAACCTTCATCTCGTGAGATTAATTCGTTTGAGAATGTCAGTCCCGG 142133017 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 ||||| || |||||||| ||||| ||||| || ||| ||| || |||||||| || Sbjct 142133016 CATTAACCCGCGCTTTTTCAGCCAGAATATCGCACAGAAGCTTCCTGAGAAGAATATTCC 142132957 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTATGAATCCAC 46812 ||| || || || || | | | |||| | | | | | ||| | ||||| Sbjct 142132956 TTCGACGCAGGCAAAAGCAATGATCCGCTCTGCAAACGATTCGGATC--CGTCGATCCAT 142132899 Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 | | ||||||| || || |||| | || || || ||||| || || ||| ||| Sbjct 142132898 TTCAGCGCCCAATTGGCTTTCTTCTGGATGCAGGGGATGGTTTCAATCGCGCGAAATAGA 142132839 Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932 || |||||| |||||| | || | || | ||| ||||| ||||| || || Sbjct 142132838 CGATTCTTTTCAGTGGAATCTTTGATGTAGGATTCGAGTAACAGACTGTACATCTCGGAG 142132779 Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992 || ||||||||||| || || ||||| ||||| || | || || | ||||| || Sbjct 142132778 TGGATGTTTTCAATGGCGATTTGAAAGCCGTAGAACGCACGCGCCTCGGCGATCTGGACT 142132719 Query 46993 TCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052 || | ||||| | | | || || || || || || ||| || || || Sbjct 142132718 TCCTTCATGAATCGGCCGGCGAGGTTTTCGAGGACGATGCCGTCTGAAGCGGCGAAGAAG 142132659 Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATA 47112 || | || || | || || | ||| || || || | | ||| | | | Sbjct 142132658 GCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTTAGGGTTTCCCATTGACGGTGG 142132599 Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172 |||| ||| | ||||||||||| |||||||||||||| ||||| |||||||| ||||| Sbjct 142132598 TCTTGTGAGAGGTCTACTTCTTCTGCTGTCCAGAATGAGGCCTCGGCTTTTTTGTACATT 142132539 Query 47173 TTCCATATATCACGATATTGGATCGGAAAAAT 47204 | ||| || | | |||||||| || || || Sbjct 142132538 TCCCAGATTTGGGGGTATTGGATTGGGAACAT 142132507 >seq15 Length=171247636 Score = 136 bits (150), Expect = 6e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| || || | ||||| ||||| | ||| | || | || |||||| |||||||| Sbjct 145647815 ACCTCCTTGGTCAACATATCGAGCAGTATCGTTAAAGACACGCAGCATTGGGATAATGCC 145647874 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || |||||||||||||||||| || ||||||||| || ||| |||||| |||||| Sbjct 145647875 ATTGGATGTACCATTTGTTCCACGTATGTAACTTCCAGTTGAACGGATATTATGAATAGA 145647934 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||| ||||| ||| ||| | |||||| ||||| || || || || Sbjct 145647935 GACACCAATTCCACCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTATCGTATAT 145647994 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 |||||| || ||||| || ||||| | || ||||||||| Sbjct 145647995 GCCCTCAATGCTATCGTCTTTCATGCATAACAGGAAACAGCTA 145648037 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || |||||||| || | || ||||| |||||||||||||| | | || | | || Sbjct 145648153 GTCCCTGCATTGAATAGGGTGGGAGAAGCATGAGTGAACCACCTCTGTGACATCAAATGA 145648212 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || || | || || | || || || || ||||| || || | || | ||||||| Sbjct 145648213 TAAGTCTTGATTACCGAATCAATGTCATCTTTGTGAATCCCAACCGAAACCCTCATCAAC 145648272 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 ||||| ||||||| ||| ||| ||| || ||||| | ||||| | || | Sbjct 145648273 ATATGTTGAGGTCTTTCAACAACCTTCCCTCCAATCTTCAATAGATATGACCTCTCAAGG 145648332 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||||||||||||||| | || |||||| | ||||| ||||| Sbjct 145648333 GTTTTAAAACCAAAATAATCATAATCAAAGTCCCGATCGTATATAAT 145648379 >seq9 Length=209865144 Score = 109 bits (120), Expect = 8e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||| | ||| || | || | || | ||||||||| |||||||| Sbjct 123174120 ACCTCCTTGATCAACATAACGGGCGGTATCGTTGAAGACACGCAACATTGGGATAATGCC 123174179 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || |||||||||||||| || || ||||| || | |||||| ||| || ||| Sbjct 123174180 ATTGGATGTACCATTTGTCCCGCGTATGTAACTCCCTGTCGAACGAATGTTATGAACAGA 123174239 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || || ||||| ||| ||| | |||||| ||||| |||||||| || Sbjct 123174240 AACACCAATCCCACCTGCTGATTTGCTGATAACAGCACATTCCTTCAAAGTGTCATATAT 123174299 Query 76933 GCCCTCTATACTATCATCCATCATG 76957 ||| || || |||||||| ||||| Sbjct 123174300 GCCTTCAATGCTATCATCTTTCATG 123174324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712920782952960