Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq26 122 2e-22 seq15 107 4e-18 seq5 105 1e-17 seq13 104 5e-17 seq7 104 5e-17 seq4 104 5e-17 seq1 104 5e-17 seq14 98.7 2e-15 seq10 87.8 4e-12 >seq26 Length=2022356 Score = 122 bits (134), Expect = 2e-22 Identities = 548/857 (64%), Gaps = 25/857 (3%) Strand=Plus/Plus Query 229758 GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTG 229817 |||||| |||||||| || | | ||||| ||||||||||| || | || | || || Sbjct 1746131 GTTCCCGATCCAATACCCGCAAGTATGGGAAATGTACAAGAAAGCCGAAGCCTCCTTTTG 1746190 Query 229818 GACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTC--AAT 229875 |||| | || ||||| ||| | || | | ||||| ||||||| | Sbjct 1746191 GACCGCCGAAGAAGTCGATCTCTCGTCGGATCTACGCCACTGG-----GAAACTCTTACC 1746245 Query 229876 GACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATT 229935 |||| |||||| || ||||||| ||| |||| | || || |||| |||||||||||| Sbjct 1746246 GACGGCGAACGCCACTTCATCACTCACGTCCTCGCCTTCTTTGCAGCCTCCGATGGTATC 1746305 Query 229936 GTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCA 229994 || | |||||||| || | || || | |||||| | | ||||| || Sbjct 1746306 GTCCTCGAAAATCTCGCCGTCCGG-TTCATGAAGGAAGTCCAAATCTCCGAGGCTCGTGC 1746364 Query 229995 ATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTAT 230054 || |||| | ||||| || |||| |||||| || || ||| ||| || | Sbjct 1746365 GTTCTATGGCTTCCAAATCGCCATCGAAAATATCCACTCCGAGATGTATAGTCTCCTCCT 1746424 Query 230055 CGACGCGCTTATTTCC--GACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAAAC 230112 || | ||| || ||| | ||| |||| ||| || | ||| | |||| Sbjct 1746425 TGAAAC--TTACATCAAGGACTCCAACGAAAAGAACCGGCTCTTCCACGCCGTCGAAACA 1746482 Query 230113 ATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAATCG 230172 | || || ||| || || ||||||| ||||||| | || | || | Sbjct 1746483 GTGCCATGTGTGGCTAAGAAAGCTGAGTGGGCATTGAAATGGATCGACGGTTCGGAAACT 1746542 Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || ||||| || || |||| | | || || ||||| ||| | || || || |||||| Sbjct 1746543 TTCGCCGAACGGCTAATCGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTC 1746602 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAG----GTGTGATGCCTGGCCTCGGTCTGTCTAA 230288 ||||| || |||||| | || |||| | | |||||||| | | | || || Sbjct 1746603 TGCGCGATATTTTGGTT----AAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAA 1746658 Query 230289 CGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAA 230347 |||||| ||| || || || ||||||||| | |||| | |||| |||| || Sbjct 1746659 CGAGTTAATCTCACGAGATGAAGGTCTCCATTGCGATTTCG-CTTGCTTGCTGTACTCCC 1746717 Query 230348 AGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAA 230407 |||| | ||||| |||| || | | || | | || ||||| || | Sbjct 1746718 TCCTCCGGTCAAAGCTGAGCGAAGAGAGCGTGAGAGGGATAGTGAGGGACGCAGTGGATA 1746777 Query 230408 ACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGCTGAA 230466 || | |||||| | ||||| ||| | || || ||| || |||| ||||||| || Sbjct 1746778 TAGAGAGGGAGTTTGTATGTGATGCTCTGCCGTG-CGCATTGGTTGGGATGAACGGAGAG 1746836 Query 230467 CTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAG 230526 || ||| | ||||||||||| ||||| || || || | || | || | || |||| | Sbjct 1746837 CTGATGAGTCAGTACATCGAGTTCGTCGCAGATCGGTTGTTGGGGGCGTTAGGGTACGGG 1746896 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 | | ||||| ||||| |||| | ||||| || |||||| | ||||| || Sbjct 1746897 AGGATTTACAATGTGGCTAACCCTTTTGATTGGATGGAACTGATTTCGTTGCAAGGCAAA 1746956 Query 230587 ACCAACTTCTTCGAAAA 230603 ||||| |||||||| || Sbjct 1746957 ACCAATTTCTTCGAGAA 1746973 >seq15 Length=6219335 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 1694733 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 1694674 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 1694673 GCCCCACGGTGGGC 1694660 Score = 102 bits (112), Expect = 2e-16 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 165701 AAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTG 165760 ||||| | ||||||||||||||||||| ||||||| || || |||| || ||||||||| Sbjct 451027 AAAACCGTAGCCCGTCTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTG 451086 Query 165761 GGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||| ||||| Sbjct 451087 GGTTCGAGCCCCACGGTGGGC 451107 >seq5 Length=11097736 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1627821 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1627762 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1627761 CCCCACGGTGGGC 1627749 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1979002 TGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1979061 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1979062 CCCCACGGTGGGC 1979074 >seq13 Length=7441454 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 3508945 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3509004 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3509005 CCCACGGTGGGC 3509016 >seq7 Length=10072460 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 5207085 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5207144 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5207145 CCCACGGTGGGC 5207156 >seq4 Length=12062019 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 6624344 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6624403 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6624404 CCCACGGTGGGC 6624415 >seq1 Length=15579451 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2771588 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2771647 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2771648 CCCACGGTGGGC 2771659 >seq14 Length=6982396 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||| | Sbjct 6841442 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 6841501 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6841502 CCCACGGTGGGC 6841513 >seq10 Length=8461613 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||| | |||| ||||||||||| || || |||| || ||||||||||||||||||| Sbjct 919483 CCCGTCTCGTTCAGACGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 919542 Query 165771 CCACGATGGGC 165781 ||||| ||||| Sbjct 919543 CCACGGTGGGC 919553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057741676830620