Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq26 127 2e-24 >seq26 Length=2022356 Score = 127 bits (140), Expect = 2e-24 Identities = 366/555 (66%), Gaps = 11/555 (2%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||| |||||||| || ||||| |||| ||| | ||||| || |||||||| Sbjct 1746703 CAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTTAAT 1746644 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAA 16320 || |||||| || || || |||||||| |||||||| ||| || || || ||||| Sbjct 1746643 CCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGC-GCAGAAACTTCCAGAGAAGAA 1746585 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC--ATCTTTATTA 16378 || || || || | ||||||||||||| ||||| ||| | || | | | | Sbjct 1746584 AATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCGT---- 1746529 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 || ||||||||| | |||| || ||||| | | ||| || ||||| | ||| Sbjct 1746528 CG-ATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGACGGCG 1746470 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 | || | | ||||| | || | || || || |||| || | ||| ||| Sbjct 1746469 TGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGACTATAC 1746410 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA-GCATCGAGCCTCCGC 16557 || || ||||| || || || ||||| || || || |||||||| ||| |||||||| | Sbjct 1746409 ATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCA-CGAGCCTCGGA 1746351 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 ||||| |||||| || || | || || || || |||||||| || || Sbjct 1746350 GATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCATCGGAGGC 1746291 Query 16618 AGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCA 16677 ||||| || || | | ||| | ||||| | |||| | |||||| | | ||| Sbjct 1746290 TGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTAAGAGTTTCCCA 1746231 Query 16678 ATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTT 16737 | || ||| || | ||| |||||||| | ||||||||| || | || || Sbjct 1746230 GTGGCGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGGCTTCGGCTTT 1746171 Query 16738 TTTATACATTTTCCA 16752 || ||||||| ||| Sbjct 1746170 CTTGTACATTTCCCA 1746156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511375570861680