Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq14 104 2e-17 seq2 104 2e-17 seq10 91.5 1e-13 seq9 82.4 7e-11 >seq14 Length=6982396 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || |||| || ||||||||||| || ||| | | Sbjct 1120016 ATGCAGATTTTCGTCAAGACTCTGACAGGGAAAACCATTACTTTGGAGGTGGAGAGCTCG 1119957 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || ||||| ||| ||| || || ||||| | || |||||| Sbjct 1119956 GATACGATTGATAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATCAG 1119897 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | || ||||| || || ||| |||||||| | ||| |||| ||||||||| Sbjct 1119896 CAAAGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 1119837 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||||||||| || || |||||| |||| || || Sbjct 1119836 ATTCAGAAGGAGTCCACCCTTCACCTGGTCTTGCG 1119802 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || |||||||||||||||| ||| ||| ||| | | Sbjct 1120472 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAAACCATAACCTTGGAAGTTGAAAGCTCC 1120413 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| || || || |||||||| | ||| || || Sbjct 1120412 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCGGACCAG 1120353 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| ||||||||||| || || ||||| || || | |||| |||| |||||||| Sbjct 1120352 CAAAGGCTTATCTTTGCTGGGAAGCAACTCGAGGACGGCCGAACTTTGGCGGATTACAAC 1120293 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || || ||||| || || || ||| |||| ||||| | || || ||| Sbjct 1120292 ATCCAAAAGGAGTCAACCCTCCACCTGGTCTTACGTCTCCGTGGTGGG 1120245 >seq2 Length=14367614 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| || ||| | || ||| || ||||| ||||||||||| ||||| || || ||| Sbjct 9074826 GATAAGGAGGGTATCCCACCAGACCAGCAAAGGCTTATCTTTGCTGGCAAGCAGCTTGAA 9074885 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | |||| | || || || ||||| || ||||||||||| |||||| ||||||| Sbjct 9074886 GATGGGAGAACTCTCGCTGACTATAATATCCAAAAGGAATCTACCCTTCACTTGGTGTTG 9074945 Query 29175 CGATTACGAGGAGGG 29189 || ||||| || ||| Sbjct 9074946 CGTTTACGTGGTGGG 9074960 >seq10 Length=8461613 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || |||| || ||||| || ||||| || ||| || |||| | Sbjct 2238794 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2238735 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | ||| ||| ||| ||||| ||||| | ||| |||||| Sbjct 2238734 GGATACAATCGATAACGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2238675 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| ||||||||||| || |||||| |||| ||| | ||| | || ||||| || Sbjct 2238674 GCAAAGGCTTATCTTTGCCGGGAAACAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2238615 Query 29141 TATTCAGAAGGAATCTACTCTTCAC 29165 |||||||| || ||||| |||||| Sbjct 2238614 CATTCAGAAAGAGTCTACCCTTCAC 2238590 >seq9 Length=8984705 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || || || || ||||| || || ||||| ||| ||| ||| || Sbjct 7042467 ATGCAAATTTTTATGAAGACCTTGACAGGAAAGACCATCACCCTGGAAGTTGAAAGTTCA 7042526 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || || ||||| ||||| | ||| ||| || Sbjct 7042527 GACACCATTGATAATGTTAAGGCCAAGATCCAGGATAAGGAAGGGATCCCCCAAGACCAG 7042586 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || |||||||| || || ||||| |||||| | || |||| || ||||| Sbjct 7042587 CAGAGGCTGATCTTTGCAGGGAAGCAACTTGAAGATGGGAGGACCCTGGCAGACTACAAC 7042646 Query 29142 ATTCAGAAGGAATCTACT 29159 |||||||||||||| ||| Sbjct 7042647 ATTCAGAAGGAATCAACT 7042664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428304291624470