Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq14 100 2e-16 seq10 95.1 1e-14 seq4 86.0 5e-12 >seq2 Length=14367614 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | || ||| || ||||| ||||||||||| ||||| || | ||| Sbjct 9074826 GATAAGGAGGGTATCCCACCAGACCAGCAAAGGCTTATCTTTGCTGGCAAGCAGCTTGAA 9074885 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | |||| | || || || ||||| |||||||||||||| |||||| ||||||| Sbjct 9074886 GATGGGAGAACTCTCGCTGACTATAATATCCAAAAGGAATCTACCCTTCACTTGGTGTTG 9074945 Query 25248 CGATTACGAGGAGGG 25262 || ||||| || ||| Sbjct 9074946 CGTTTACGTGGTGGG 9074960 >seq14 Length=6982396 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| |||| || |||| || ||||||||||| || ||| | | Sbjct 1120016 ATGCAGATTTTCGTCAAGACTCTGACAGGGAAAACCATTACTTTGGAGGTGGAGAGCTCG 1119957 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || | ||| ||| ||| || || ||||| | || |||||| Sbjct 1119956 GATACGATTGATAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATCAG 1119897 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || ||||| || || |||||||||||| | ||| |||| ||||||||| Sbjct 1119896 CAAAGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 1119837 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 ||||| ||||| || || |||||| |||| || || Sbjct 1119836 ATTCAGAAGGAGTCCACCCTTCACCTGGTCTTGCG 1119802 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || |||||||||||||||| ||| ||| ||| | | Sbjct 1120472 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAAACCATAACCTTGGAAGTTGAAAGCTCC 1120413 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | ||| || || || |||||||| | ||| || || Sbjct 1120412 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCGGACCAG 1120353 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| ||||||||||| || || ||| | || || | |||| |||| |||||||| Sbjct 1120352 CAAAGGCTTATCTTTGCTGGGAAGCAACTCGAGGACGGCCGAACTTTGGCGGATTACAAC 1120293 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || |||||||| || || || ||| |||| ||||| | || || ||| Sbjct 1120292 ATCCAAAAGGAGTCAACCCTCCACCTGGTCTTACGTCTCCGTGGTGGG 1120245 >seq10 Length=8461613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || |||| || ||||| || ||||| || ||| || |||| | Sbjct 2238794 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2238735 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | ||||| ||| ||| ||||| ||||| | ||| |||||| Sbjct 2238734 GGATACAATCGATAACGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2238675 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| ||||||||||| || ||||||||||| ||| | ||| | || ||||| || Sbjct 2238674 GCAAAGGCTTATCTTTGCCGGGAAACAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2238615 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 ||||| || || ||||| |||||| Sbjct 2238614 CATTCAGAAAGAGTCTACCCTTCAC 2238590 >seq4 Length=12062019 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || ||| | ||||| || || ||||||||||| ||| ||| ||| | Sbjct 4154218 AAGATGCAGATCTTCGTGAAAACCTTAACCGGCAAAACCATCACCCTCGAGGTGGAGAGC 4154277 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| || | | | | ||||| || || || || ||||| | || ||| Sbjct 4154278 TCAGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGAT 4154337 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 ||||| | | ||||| || ||||| ||| | ||||| | ||| | || |||||| Sbjct 4154338 CAACAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGACGGCCGAACCCTTGCGGATTAC 4154397 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||| ||||||||||| ||||| ||| |||| Sbjct 4154398 AATATCCAAAAGGAATCGACTCTCCACCTGGT 4154429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410766389996636