Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2 131 3e-25 seq1649 118 2e-21 seq9 118 2e-21 seq10 114 2e-20 seq14 109 8e-19 seq4 86.0 9e-12 >seq2 Length=14367614 Score = 131 bits (144), Expect = 3e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || ||||| || ||||| || | ||| |||| ||| Sbjct 9074049 ATGCAAATCTTTGTCAAGACTCTCACAGGAAAGACTATCACCTTGGAGGTTGAGAGCTC- 9074107 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| |||| | || || || ||||| || ||||| || || ||||| || Sbjct 9074108 TGACACTATTGATAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCA 9074167 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||||||||||||| || ||||| | || ||| | ||||| ||| || ||||| Sbjct 9074168 ACAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCCTAGCTGACTATAA 9074227 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | |||||||| | ||| | || |||||||| Sbjct 9074228 CATCCAGAAGGAGTCCACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGTAT 9074278 Score = 125 bits (138), Expect = 1e-23 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | |||||||| ||||| || ||||| || | ||| |||| ||| Sbjct 9074277 ATGCAAATCTTTGTCAAGACACTCACAGGAAAGACTATCACCTTGGAGGTTGAGAGCTC- 9074335 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| |||| | ||| || || ||||| || ||||| || || |||||||| Sbjct 9074336 TGATACAATTGATAATGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGATCA 9074395 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||||||| ||||| || ||||| | || || |||| || ||| || ||||| Sbjct 9074396 ACAAAGGCTTATCTTTGCTGGCAAACAGCTTGAAGACGGTCGCACCCTAGCTGACTATAA 9074455 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || | |||||||| | ||| | |||||||| || Sbjct 9074456 CATCCANNNNNNNNNNACCCTCCATTTGGTGCTTCGTCTTCGAGGTGGCAT 9074506 Score = 125 bits (138), Expect = 1e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || || || || ||||| || | ||| |||| || | Sbjct 9074733 ATGCAAATTTTTGTGAAGACTCTTACGGGAAAGACTATCACATTGGAGGTTGAGAGTTCA 9074792 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || || || |||||||| || ||||| ||||| || || Sbjct 9074793 -GATACCATTGATAATGTGAAGGCAAAGATCCAAGATAAGGAGGGTATCCCACCAGACCA 9074851 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| || || || | || ||| | |||| | | || ||||| Sbjct 9074852 GCAAAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGGAGAACTCTCGCTGACTATAA 9074911 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| ||||| || | || ||||| || |||||||| ||||| || Sbjct 9074912 TATCCAAAAGGAATCTACCCTTCACTTGGTGTTGCGTTTACGTGGTGGGAT 9074962 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | || || || |||||||| || || || | ||| |||| ||| Sbjct 9073821 ATGCAAATCTTTGTGAAAACCCTTACAGGCAAGACCATCACCCTTGAGGTTGAGAGCTC- 9073879 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || ||||| || ||||| || || || || || Sbjct 9073880 TGACACTATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCTCCCGACCA 9073939 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||||||||| || ||||| | || ||| | ||||| ||| || ||||| Sbjct 9073940 GCAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCCTAGCTGACTATAA 9073999 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || ||||| | || | || |||||||| Sbjct 9074000 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGGCTCCGTGGTGGTAT 9074050 >seq1649 Length=3542 Score = 118 bits (130), Expect = 2e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | ||||| | || || ||||| || ||| | ||| | || ||| Sbjct 583 AATGCAGATTTTTGTGAAGACCTTGACTGGTAAAACCATTACTTTGGAGGTGGAGAGCTC 642 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| |||||| || | ||| || || |||||||| || ||||| |||||||| | Sbjct 643 -TGACACAATTGACAACGTCAAAGCCAAGATCCAAGATAAGGAGGGTATCCCACCTGACC 701 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||||||| | |||||||| || || || | || ||| | | ||| | | ||| |||| Sbjct 702 AACAAAGGTTGATTTTTGCTGGGAAGCAGCTTGAAGATGGGAGGACACTTGCAGACTATA 761 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 | || ||||| || ||||| ||||||||||||| || Sbjct 762 ACATCCAAAAGGAGTCAACCCTGCATTTGGTTTTGCG 798 >seq9 Length=8984705 Score = 118 bits (130), Expect = 2e-21 Identities = 171/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | || || || || || ||||| || ||| ||||| | || || | Sbjct 7052624 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATCACTTTAGAGGTGGAGAGTTCA 7052683 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || |||| | || ||| ||||| || || || ||||| ||||| || || Sbjct 7052684 -GATACCATCGATAATGTGAAGGCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCA 7052742 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | |||||||| |||||||| | || ||| | |||| | | ||| ||||| Sbjct 7052743 GCAGAGGTTAATTTTTGCCGGAAAACAGCTTGAAGATGGCAGAACCCTTGCAGACTATAA 7052802 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || || ||||| | ||||||||||| || | || ||||| || ||| || Sbjct 7052803 CATTCAGAAGGAGTCAACCCTCCATTTGGTTTTGCGGCTCCGTGGTGGCATGCAAATTT 7052861 Score = 102 bits (112), Expect = 1e-16 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | || || | || || ||||| || ||| | ||| | || ||| Sbjct 7046188 AATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACCATCACTTTGGAGGTGGAGAGCTC 7046247 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| |||||| || | ||| || || |||||||| || ||||| |||||||| | Sbjct 7046248 -TGACACAATTGACAACGTCAAAGCCAAGATCCAAGATAAGGAGGGTATCCCACCTGACC 7046306 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| ||| | ||||| || ||||| || | || ||| | | ||| | | ||| |||| Sbjct 7046307 AACAGAGGTTGATTTTCGCTGGAAAGCAGCTCGAAGATGGGAGGACACTTGCAGACTATA 7046366 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 | || ||||| |||||| ||||||||||||| || Sbjct 7046367 ACATCCAAAAG--ATCAACCCTGCATTTGGTTTTGCG 7046401 Score = 102 bits (112), Expect = 1e-16 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || ||| | ||||| | || || ||||| || ||| | ||| | || ||| Sbjct 7053079 AATGCAGAT-TTTGTGAAGACCTTGACTGGTAAAACCATTACTTTGGAGGTGGAGAGCTC 7053137 Query 124597 ATGATAC-AATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| || |||| || | ||| || || |||||||| || ||||| |||||||| Sbjct 7053138 -TGACACCAATTGACAACGTCAAAGCCAAGATCCAAGATAAGGA-GGTATCCCACCTGAC 7053195 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 ||||||||| | |||||||| || || || | || ||| | || || | | ||| ||| Sbjct 7053196 CAACAAAGGTTGATTTTTGCTGGGAAGCAGCTTGAAGATGGAGGA-CACTTGCAGACTAT 7053254 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 || || ||||| || ||||| ||||||||||||| || Sbjct 7053255 AACATCCAAAAGGAGTCAACCCTGCATTTGGTTTTGCG 7053292 Score = 89.7 bits (98), Expect = 8e-13 Identities = 164/239 (69%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATA-ACTATAGAGATTGAAGCAAA 124597 ||||| |||||| | || || || || || ||||| || ||| | ||| | || Sbjct 7045733 ATGCAGATATTTGTGAAAACTCTCACCGGGAAAACCATCCACTTTGGAGGTGGAGAGTTC 7045792 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | || || ||||| || || || ||||| ||||| || || Sbjct 7045793 GGATACCATCGACAATGTGAAGGCAAAGATTCAGGACAAGGAGGGTATCCCACCAGACCA 7045852 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | |||||||| |||||||| | || ||| | |||| | | ||| ||||| Sbjct 7045853 GCAGAGGTTAATTTTTGCTGGAAAACAGCTTGAAGATGGCAGAACCCTTGCAGACTATAA 7045912 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || || || ||||| | ||||||||||| || | || ||||| || ||| || Sbjct 7045913 CATCCAGAAGGAGTCAACCCTCCATTTGGTTTTGCGACTCCGTGGTGGCATGCAAATTT 7045971 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| || |||||||| || || || || || |||||||||||||| || || Sbjct 7042324 AAAATTCAAGACAATGAAGGTAT-CCTCCAGACCAGCAGAGGCTTATTTTTGCTGGTAAG 7042382 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | ||||| | || | | |||||| || |||||||| || ||||| | || Sbjct 7042383 CAGCTTAAGGATGGGAAGACCCTTGCAGATTACAACATTCAAAAGGAGTCAACCCTCCAC 7042442 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || || | || ||||| || ||| || Sbjct 7042443 TTGGTGTTGCGCCTTCGTGGTGGGATGCAAATTT 7042476 >seq10 Length=8461613 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| | || || ||||| || || | ||| | ||| Sbjct 2238794 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2238735 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| ||| | || || ||||| ||||| ||||| || || || ||||| Sbjct 2238734 GGATACAATCGATAACGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2238675 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| ||||| || |||||||| |||||| | | || |||| |||||||| Sbjct 2238674 GCAAAGGCTTATCTTTGCCGGGAAACAATTGGAGGATGGGAGGACTTTAGCTGATTATAA 2238615 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| ||||| || || | || | ||| | ||| | || ||||| Sbjct 2238614 CATTCAGAAAGAGTCTACCCTTCACCTTGTTCTTCGTCTCCGTGGTGG 2238567 >seq14 Length=6982396 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || ||||| ||||| | || ||||| Sbjct 1120244 ATGCAAATCTTTGTCAAGACCCTGACGGGTAAAACCATAACCTTGGAAGTTGAAAGTTCC 1120185 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || || || || || || ||||| || || || ||||| Sbjct 1120184 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCGCCAGATCAG 1120125 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| |||||||| || || | ||||| ||||||| || | |||||||| Sbjct 1120124 CAAAGGCTTATCTTTGCAGGGAAGCAGCTCGAGGACGGTCGAACTTTGGCTGATTATAAC 1120065 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| ||||| || || | ||||||||||| | | || ||||| || Sbjct 1120064 ATTCAGAAAGAGTCGACCCTTCATTTGGTTTTGAGGCTTCGTGGTGGGAT 1120015 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || |||||||| ||||| | || ||||| Sbjct 1120472 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAAACCATAACCTTGGAAGTTGAAAGCTCC 1120413 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || || || || || |||||||| || || || || || Sbjct 1120412 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCGGACCAG 1120353 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| ||||| || || ||| | ||||| | ||||| || | ||||| || Sbjct 1120352 CAAAGGCTTATCTTTGCTGGGAAGCAACTCGAGGACGGCCGAACTTTGGCGGATTACAAC 1120293 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | || |||| |||||| | || ||||| || Sbjct 1120292 ATCCAAAAGGAGTCAACCCTCCACCTGGTCTTACGTCTCCGTGGTGGGAT 1120243 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || || ||||| ||||| | || | ||| Sbjct 1120700 ATGCAAATCTTCGTCAAGACCCTGACGGGTAAAACCATAACCCTGGAAGTCGAAAGCTCC 1120641 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || || || || || ||||| || ||||| || || Sbjct 1120640 GACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCGGACCAG 1120581 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| ||||| || || || | ||||| | |||| |||| ||||| || Sbjct 1120580 CAAAGGCTTATCTTTGCTGGGAAGCAGCTCGAGGACGGCAGAACCTTAGCGGATTACAAC 1120521 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | || | || | |||||||| ||||| || Sbjct 1120520 ATCCAAAAGGAGTCAACCCTCCACCTCGTCCTCCGTTTACGTGGTGGGAT 1120471 >seq4 Length=12062019 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || || || || | ||| | || | Sbjct 4154905 ATGCAGATCTTCGTGAAGACGCTGACCGGAAAGACGATTACGCTTGAGGTGGAGAGTTCT 4154964 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| |||| | ||| |||||||||||||| || || || ||||||||||| Sbjct 4154965 GATACAATCGATAATGTGAAAGCAAAAATTCAAGATAAGGAGGGGATTCCACCTGATCAG 4155024 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || || || || || || || ||||| | || || | | |||||| || Sbjct 4155025 CAGAGGCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGGCGCACTCTTGCAGATTACAAC 4155084 Query 124719 ATTCAAAAAGAATCAAC 124735 || || || || || || Sbjct 4155085 ATCCAGAAGGAGTCTAC 4155101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755398642003200