Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10 122 1e-22 seq9 105 8e-18 seq14 100 3e-16 seq1649 98.7 1e-15 seq13 98.7 1e-15 seq4 95.1 1e-14 >seq10 Length=8461613 Score = 122 bits (134), Expect = 1e-22 Identities = 147/196 (75%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || || |||||||||| ||| || |||| || ||||| || || ||||| Sbjct 2239058 CTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAA 2239117 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||| ||||||| || | || ||||||||| |||||| |||| ||| Sbjct 2239118 GATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTGA-CGT 2239176 Query 43112 CGCCAC-CGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | || ||||||| ||| || || |||| |||||||||||||| || | || | Sbjct 2239177 TGTCAATCGTGTCGGAACTC---TCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTT 2239233 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 2239234 TGACGAAGATTTGCAT 2239249 >seq9 Length=8984705 Score = 105 bits (116), Expect = 8e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||||||||| || || || | || |||||||| |||||||| || Sbjct 7052587 CTCCTTCTGGATATTGTAATCAGCAAGGGTGCGGCCATCCTCTAGCTGTTTACCAGCAAA 7052528 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||| ||||| | ||| | | ||||||||| ||| || ||||| | Sbjct 7052527 GATAAGCCTCTGTTGGTCTGGCGGGATCCCCTCCTTGTCTTGGATCTTGGCTTTGACATT 7052468 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| ||| |||||| || | |||||||| ||||| || || || || Sbjct 7052467 ATCAATAGTGTCAGAGCT---TTCCACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTT 7052411 Query 43169 TACAAAGATTTGCAT 43183 |||||||| ||||| Sbjct 7052410 CACAAAGATCTGCAT 7052396 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/208 (72%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||||| ||| |||||| || |||||||| ||||||||||| || | || || | ||| Sbjct 7053507 ATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTG 7053448 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||| ||||| || || | | ||||||||| | || | | |||||||||| ||| | | Sbjct 7053447 CTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGG-AATCCCTCCTTGTCC-TGAATCT 7053390 Query 43100 TTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGC 43155 ||| ||| | | | | |||||| |||| || || || | ||||||||||| | Sbjct 7053389 TTGCTTTCACATTGTCAATCGTGTCTGAGCTC---TCAACCTCCAGGGTGATGGTTTT-C 7053334 Query 43156 CCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | | ||||| ||||| || ||||| Sbjct 7053333 CCATCAAGGTCTTGACAAATATCTGCAT 7053306 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | ||||| |||||||||| || | |||||| || || || || || Sbjct 7046413 CCTCCTCTAAGGCGCAAAACCAAATGCAGGGT--TGATCTTTTGGATGTTATAGTCTGCA 7046356 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | | || || |||||||| |||||||| || | | ||| ||||| | || Sbjct 7046355 AGTGTCCTCCCATCTTCGAGCTGCTTTCCAGCGAAAATCAACCTCTGTTGGTCAGGTGGG 7046296 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTC---GCTCGATTC 43132 | | |||||| || ||| || ||||| ||| | || ||||| |||| || Sbjct 7046295 ATACCCTCCTTATCTTGGATCTTGGCTTTGA-CGTTGTCAATTGTGTCAGAGCTC---TC 7046240 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||| || | ||||||||||| || || | || || ||||| || |||||| Sbjct 7046239 CACCTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATT 7046188 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| ||||| ||| |||||| || |||||||| ||||||||||| || | || || Sbjct 7046621 ACCAGATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCC 7046562 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | ||||| ||||| || || | | ||||||||| | || | | |||||||||| || Sbjct 7046561 A-ATGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCC-TG 7046504 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | |||| ||| | | | | |||||| | ||| || || | ||||||||||| Sbjct 7046503 AATCTTTGCTTTCACATTGTCAATCGTGTC-TGAGCTTCAACCTCCAGGGTGATGGTTTT 7046445 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| | ||| || ||||| Sbjct 7046444 CCCAGTCAAGGTCTTGAAAAATATCTGCAT 7046415 >seq14 Length=6982396 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| |||||||| | || ||| || ||||| || |||||||||| ||| || |||| Sbjct 1120032 CAAAACCAAATGAAGGGTCGACTCTTTCTGAATGTTATAATCAGCCAAAGTTCGACCGTC 1120091 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||| || || || || || | ||||| || | ||| | | |||||||| Sbjct 1120092 CTCGAGCTGCTTCCCTGCAAAGATAAGCCTTTGCTGATCTGGCGGAATTCCTTCCTTGTC 1120151 Query 43091 CATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| || || | ||| | | | |||||| ||| || || | || |||| Sbjct 1120152 CTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAACTTTCAACTTCCAAGGTTATGG 1120210 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || ||||| |||||||||||||| Sbjct 1120211 TTTTACCCGTCAGGGTCTTGACAAAGATTTGCAT 1120244 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || |||||||| |||| ||| || |||| || || ||||| ||||| || Sbjct 1120281 CTCCTTTTGGATGTTGTAATCCGCCAAAGTTCGGCCGTCCTCGAGTTGCTTCCCAGCAAA 1120340 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | |||||||| | || | | || |||||| ||| || || | ||| Sbjct 1120341 GATAAGCCTTTGCTGGTCCGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTCA-CGT 1120399 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || || | || |||||||||||||| || ||||| | Sbjct 1120400 TGTCGATGGTGTCGGAGCTTTCAACTTCCAAGGTTATGGTTTTGCCCGTCAGGGTCTTGA 1120459 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 1120460 CAAAGATTTGCAT 1120472 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || |||||||| || | || | |||| || |||||||| ||||| || Sbjct 1120509 CTCCTTTTGGATGTTGTAATCCGCTAAGGTTCTGCCGTCCTCGAGCTGCTTCCCAGCAAA 1120568 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | |||||||| | || | | ||||||||| ||| || || | ||| Sbjct 1120569 GATAAGCCTTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 1120627 Query 43112 CGCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || | ||||| ||| || || | || |||||||| ||||| || ||||| | Sbjct 1120628 TGTCAATGGTGTCGGAGCTTTCGACTTCCAGGGTTATGGTTTTACCCGTCAGGGTCTTGA 1120687 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 1120688 CGAAGATTTGCAT 1120700 >seq1649 Length=3542 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||||| ||| |||||| || |||||||| ||||||||||| || | || || | ||| Sbjct 1015 ATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTG 956 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||| ||||| || || | | ||||||||| | || | | |||||||||| ||| | | Sbjct 955 CTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCC-TGAATCT 897 Query 43100 TTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGC 43155 ||| ||| | | | | |||||| |||| || || || | ||||||||||| | Sbjct 896 TTGCTTTCACATTGTCAATCGTGTCTGAGCTC---TCAACCTCCAGGGTGATGGTTTTCC 840 Query 43156 CCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||| ||||| || ||||| Sbjct 839 CAGTCAAGGTCTTGACAAATATCTGCAT 812 >seq13 Length=7441454 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || || || || || || ||||| |||| || |||||||| || ||||| Sbjct 4972669 CTCCTTCTGGATGTTATAGTCGGCTAGGGTCCGGCCGTCTTCAAGCTGCTTGCCGGCGAA 4972610 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 |||||| || || ||||| | || | || |||||||| ||| || |||| ||| Sbjct 4972609 TATGAGACGTTGTTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 4972551 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||||| || || | || ||||| || |||||||| || || | Sbjct 4972550 TGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATGGTCTTACCCGTTAGGGTTTTCA 4972491 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 4972490 CGAAGATCTGCAT 4972478 >seq4 Length=12062019 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| ||||||||||| || || || || |||| || || ||||| || ||||| Sbjct 4154411 TCCTTTTGGATATTGTAATCCGCAAGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAG 4154352 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | ||||| || || | || | || |||||||| ||| || |||| ||| Sbjct 4154351 ATCAAGCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTT 4154293 Query 43113 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | ||||| |||| ||||| |||| |||||||||||||| |||| || || Sbjct 4154292 GTCGATGGTGTCTGAGCTC---TCCACCTCGAGGGTGATGGTTTTGCCGGTTAAGGTTTT 4154236 Query 43169 TACAAAGATTTGCATTTT 43186 || ||||| ||||| || Sbjct 4154235 CACGAAGATCTGCATCTT 4154218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571774184748720