Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq9 111 2e-19 seq2 95.1 2e-14 >seq9 Length=8984705 Score = 111 bits (122), Expect = 2e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 ||||| || ||||| || || ||||| || | ||| || || ||| || || |||||||| Sbjct 1646379 GTTCCTCCCCTAAGCCTCAAAACCAAGTGAAGAGTCGACTCCTTTTGA-ATGTTATAATC 1646437 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || |||||||| | || || | ||||| || |||||||||||||| |||||||| || Sbjct 1646438 TGCAAGAGTTCGACCTTCTTCAAGCTGTTTGCCCGCAAAAATCAATCTCTGCTGATCAGG 1646497 Query 146167 AGGAATTCCTTCTTTATC 146184 ||| |||||||| ||||| Sbjct 1646498 AGGGATTCCTTCCTTATC 1646515 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || ||||| || | ||| || || || || ||||||||| Sbjct 1708110 GTTCCTCCCCTAAGCCTCAAAACCAAGTGAAGAGTCGACTCCTTTTGGATGTTATAATCT 1708169 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| | ||| || | || || ||||||||||| ||||| |||||||| || Sbjct 1708170 GCAAGAGTTCGACCATCTTCAAGCTGCTTACCAGCAAAAATTAATCTCTGCTGATCAAGA 1708229 Query 146168 GGAATTCCTTCTTTATC 146184 || |||||||| || || Sbjct 1708230 GGGATTCCTTCCTTGTC 1708246 >seq2 Length=14367614 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || || | || | || || || || || |||||||| Sbjct 7189433 GTTCCTCCCCTAAGCCTCAAAACAAGGTGAAGTGTGGACTCCTTTTGGATGTTATAATCA 7189374 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| || ||| || | || || |||||||||||||| || |||||||| ||| Sbjct 7189373 GCAAGAGTTCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGA 7189314 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||||||||| || Sbjct 7189313 GGGATGCCTTCTTTATCCTG 7189294 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/228 (67%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||| | | ||||| || | || || || ||| || || |||||||| | Sbjct 9074731 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGACTCCTTTTGA-ATGTTATAATCAGC 9074673 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || || | ||| || | ||||||||||||||||||||| || ||||| || || || Sbjct 9074672 AAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 9074613 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 || || |||||||| || ||| ||||| || ||||| Sbjct 9074612 GATACCCTCTTTATCCTGAATCTTGGCCTTGACATTGTCAATAGTGTCTGAGCTCTCTAC 9074553 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | ||||| ||||||||||| | || || | || |||||||| Sbjct 9074552 CTCCAAAGTGATCGTTTTACCTGTGAGAGTCTTGACAAAGATTTGCAT 9074505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743469947758080