Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4 125 5e-24 seq13 111 1e-19 seq10 105 4e-18 seq5 102 5e-17 seq1649 87.8 1e-12 seq14 86.0 4e-12 seq9 86.0 4e-12 seq2 82.4 5e-11 >seq4 Length=12062019 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||||||||| ||||| ||||| | || ||| ||||| || |||||||||| | Sbjct 4154675 CCTCCGCGCAGCCTGAGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCGGCC 4154616 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || | ||||| ||||| || Sbjct 4154615 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGAGGG 4154556 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | |||| || | |||||| Sbjct 4154555 ATGCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTCGACT 4154496 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| |||||||| || ||||| || ||||||||||| Sbjct 4154495 TCAAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 4154449 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | ||| || ||||| |||||||| || | Sbjct 4155131 CCACCGCGAAGGCGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGCA 4155072 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| ||||||||||| || ||||| ||||||| |||||| || || Sbjct 4155071 AGAGTGCGCCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGA 4155012 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||| || || ||||||||| | || | || | ||| | || || Sbjct 4155011 ATCCCCTCCTTATCTTGAAT-TTTTGCTTTCACATTATCGATTGTATCAGAACTCTCCAC 4154953 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || | ||| || || || ||||| || || ||||| |||||||||||| ||| Sbjct 4154952 CTCAAGCGTAATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCATCCCTC 4154900 >seq13 Length=7441454 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || |||||||| | || || ||||| ||||| ||||||| Sbjct 4972704 CCACCGCGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCT 4972645 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| ||||| || || ||||| || Sbjct 4972644 AGGGTCCGGCCGTCTTCAAGCTGCTTGCCGGCGAATATGAGACGTTGTTGGTCCGGTGGG 4972585 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | |||| |||||||| Sbjct 4972584 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGATTCGACC 4972525 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCT 34393 |||| || ||||| || || || || |||||||| ||||||||||| ||| Sbjct 4972524 TCCAAGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATGGCT 4972474 >seq10 Length=8461613 Score = 105 bits (116), Expect = 4e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || ||||| | ||| || || || ||||| || || | | Sbjct 2239023 CCCCCACGAAGCCTGAGGACAAGGTGGAGAGTTGACTCCTTTTGGATGTTATAATCAGCC 2239082 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| |||| |||| ||| || || ||||| ||||||||||| |||||| || Sbjct 2239083 AAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGAGGG 2239142 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| || ||||| ||| | | | | |||| |||| |||| Sbjct 2239143 ATGCCTTCCTTGTC--CTGGATTTTGGCCTTGACGTTGTCAATCGTGTCGGAACTCTCGA 2239200 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||||||||||||||| | |||||| || ||||| ||||| Sbjct 2239201 CTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGACGAAGATTTGCAT 2239249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || |||||||| | ||| || ||||| ||||| || || | | Sbjct 2239251 CCGCCACGAAGACGGAGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCCGCC 2239310 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| |||| || | ||| || || ||||| ||||||| ||||||||| || Sbjct 2239311 AAGGTACGACCGTCTTCGAGCTGTTTCCCGGCGAAGATGAGCCTTTGCTGGTCGGGTGGG 2239370 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | | || | |||| ||||| Sbjct 2239371 ATCCCTTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACC 2239430 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || ||||| |||||||| || |||||||| |||||||||||| Sbjct 2239431 TCGAGAGTTATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATC 2239478 >seq5 Length=11097736 Score = 102 bits (112), Expect = 5e-17 Identities = 145/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGG-ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256 ||| ||||| ||||||||||||| || || ||| |||| || | ||||||||| |||| Sbjct 4356997 TTCCTTCTGGATGTTGTAGTCGGCTAAGGTG-CGGCCGTCTTCGAGCTGCTTGCCGGCGA 4356939 Query 34257 AAATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AG 34314 | ||||| || ||||||| || |||| | | |||||||| ||| || ||||| | Sbjct 4356938 AGATGAGACGTTGCTGGTCCGGCGGG-ATTCCTTCCTTGTCTTGGATC-TTGGCTTTGAC 4356881 Query 34315 ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 || | | || | || | |||||||| || | || ||||| || || || || ||||| Sbjct 4356880 ATTGTCGATGGTGTCAGAGGATTCGACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTT 4356821 Query 34375 CACAAAGATCTGCATC 34390 || |||||||||||| Sbjct 4356820 GACGAAGATCTGCATC 4356805 >seq1649 Length=3542 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || |||||||| | ||| || | || |||||||||||||| || || Sbjct 1002 TCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTGCTTGCCAGCAAAG 943 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || | || ||||||||| || | | ||||||||| |||||| ||||| | || Sbjct 942 ATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAATCTTT-GCTTTCACATT 884 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | |||| || | || || |||| ||||||||||| || || | || || || Sbjct 883 GTCAATCGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTCAAGGTCTTGAC 824 Query 34378 AAAGATCTGCATCGCTC 34394 ||| ||||||||| ||| Sbjct 823 AAATATCTGCATCCCTC 807 >seq14 Length=6982396 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||| |||| ||| | | | || Sbjct 1120717 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCCAGGGTTCTGCCATCC 1120776 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 || | |||||| || || || || |||| |||||||| | ||| | || |||||||| Sbjct 1120777 TCGAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGTGGGATCCCT-TCCTTGTC 1120835 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | | |||| || | ||||| |||| |||||| || Sbjct 1120836 CTGGATCTTGGCCTTCACGTTGTCGATCGTGTCAGAACTCTCGACTTCCAGCGTGATTGT 1120895 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||| || || || |||||||||||| Sbjct 1120896 CTTGCCGGTGAGTGTCTTAACGAAGATCTGCATC 1120929 >seq9 Length=8984705 Score = 86.0 bits (94), Expect = 4e-12 Identities = 135/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||| ||||| | || | | | || || | ||| || || || ||| Sbjct 7045924 TCCTTCTGGATGTTATAGTCTGCAAGGGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAA 7045865 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || ||||||||| || | | ||||||||| |||||| ||| | || | Sbjct 7045864 ATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTG 7045805 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTG-ATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | || || |||| ||| |||||||| ||||||||||||||||| Sbjct 7045804 TCGATGGTATCCGAACTCTCCACCTCCAAAGTGGATGGTTTTCCCGGTGAGAGTTTTCAC 7045745 Query 34378 AAAGATCTGCAT 34389 ||| |||||||| Sbjct 7045744 AAATATCTGCAT 7045733 >seq2 Length=14367614 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || |||| ||||||| ||| | || || ||||| ||||| ||||| | Sbjct 9074047 CCACCACGGAGCCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCT 9073988 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||| ||||| || ||||| |||| ||||||||| || Sbjct 9073987 AGGGTTCGGCCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCGGGAGGG 9073928 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | | || | || | || || Sbjct 9073927 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACC 9073868 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| || || |||||||||||||| |||||| Sbjct 9073867 TCAAGGGTGATGGTCTTGCCTGTAAGGGTTTTCACAAAGATTTGCATC 9073820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323048083989440