Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1649 100 2e-16 seq2 100 2e-16 seq10 98.7 8e-16 seq9 98.7 8e-16 seq14 86.0 5e-12 seq4 86.0 5e-12 >seq1649 Length=3542 Score = 100 bits (110), Expect = 2e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| ||||||||| || |||||||| ||| |||| | || |||| Sbjct 1019 CAAGATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCCA 960 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 || || || || || ||||||| ||| ||||| ||||| | |||||||||||| || Sbjct 959 ACTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGAA 900 Query 45249 TTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 | ||||||| | | || | |||| | ||| ||||||| ||| || || || Sbjct 899 -TCTTTGCTTTCACATTGTCAATCGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTTTTC 841 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| ||||| || ||||| Sbjct 840 CCAGTCAAGGTCTTGACAAATATCTGCAT 812 >seq2 Length=14367614 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||| |||||||| || || ||| | | || || Sbjct 9074713 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCAGCAAGTGTCCTTCCATCTTCA 9074654 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||||||||| || || ||||||| ||| ||||| || || | |||||| || ||| | Sbjct 9074653 AGTTGTTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGA 9074594 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | ||| ||||||| || ||||| || Sbjct 9074593 ATCTTGGCCTTGACATTGTCAATAGTGTCTGAGCTCTCTACCTCCAAAGTGATCGTTTTA 9074534 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||| ||||||||||||||| Sbjct 9074533 CCTGTGAGAGTCTTGACAAAGATTTGCATG 9074504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| ||| | | || ||||| || || || || || Sbjct 9075151 TCCTTCTGGATGTTGTAGTCTGCCAGAGTCCTCCCATCCTCCAGCTGCTTCCCAGCAAAA 9075092 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| ||| ||||| ||||| | || ||||||||| || ||| ||| || Sbjct 9075091 ATCAACCTCTGCTGGTCTGGAGGGATCCCTTCCTTGTCCTGGATCTTTGCCTTCACATTA 9075032 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | ||||| | || ||||||| || | ||||| || |||| ||||||||| Sbjct 9075031 TCAATGGTGTCCGAGCTTTCAACCTCCAATGTTACTGTCTTTCCAGTCAAGGTCTTCACA 9074972 Query 45326 AAGATTTGCAT 45336 || || ||||| Sbjct 9074971 AATATCTGCAT 9074961 >seq10 Length=8461613 Score = 98.7 bits (108), Expect = 8e-16 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 45180 CGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCT 45239 |||| ||||| ||||| |||||||| || | |||||||||||||||||| | || |||| Sbjct 2239093 CGTCCTCCAGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCCT 2239152 Query 45240 TGTCCGCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTA 45298 ||||| ||||| ||| | || | || | |||| || ||| || || | ||| Sbjct 2239153 TGTCCTGGATTTTGGCCTTGA-CGTTGTCAATCGTGTCGGAACTCTCGACTTCGAGGGTG 2239211 Query 45299 ATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| |||| ||| || || ||||||||||| Sbjct 2239212 ATGGTTTTGCCGGTCAAAGTTTTGACGAAGATTTGCAT 2239249 >seq9 Length=8984705 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/233 (70%), Gaps = 7/233 (3%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | | || || ||||| || || || ||||||||| ||||| ||||| | Sbjct 7045961 GCCACCACGGAGTCGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATGTTATAGTC-TG 7045903 Query 45169 CA---GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGG 45225 || ||| | | || || || |||||||| || || || |||| ||| ||||| || Sbjct 7045902 CAAGGGTT--CTGCCATCTTCAAGCTGTTTTCCAGCAAAAATTAACCTCTGCTGGTCTGG 7045845 Query 45226 AGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTC 45285 || | ||||||||||||| ||| ||| ||| || | | | | ||| || ||| Sbjct 7045844 TGGGATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCCGAACTCTC 7045785 Query 45286 CACCTCCACGGT-AATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||| || || || || || || ||||| |||||||| || |||||| Sbjct 7045784 CACCTCCAAAGTGGATGGTTTTCCCGGTGAGAGTTTTCACAAATATCTGCATG 7045732 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA---GTTGGCGATCG 45181 || ||||| || || || ||||||||||||||| ||||| | || ||| | | Sbjct 7052835 AAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTC-TGCAAGGGTT--CTGCCA 7052779 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || || ||||||||||| || || |||| ||| ||||| || || | |||||||||| Sbjct 7052778 TCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTG 7052719 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| ||| || ||| || | | | | || || ||||||||| | || || Sbjct 7052718 TCCTGAATCTTCGCCTTCACATTATCGATGGTATCTGAACTCTCCACCTCTAAAGTGATG 7052659 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || ||||| |||||||| || |||||| Sbjct 7052658 GTTTTCCCAGTGAGAGTTTTCACAAATATCTGCATG 7052623 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||| ||||||||| || |||||||| ||| |||| | || ||| Sbjct 7046621 ACCAGATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCC 7046562 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | | | || || || || ||||||| ||| ||||| ||||| | |||||||||||| | Sbjct 7046561 AAT-GCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTGA 7046503 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 | | ||||||| | | || | ||| | | | || ||||||| ||| || || || Sbjct 7046502 A-TCTTTGCTTTCACATTGTCAATCGTGT-CTGAGCTTCAACCTCCAGGGTGATGGTTTT 7046445 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| | ||| || ||||| Sbjct 7046444 CCCAGTCAAGGTCTTGAAAAATATCTGCAT 7046415 >seq14 Length=6982396 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||| ||| || ||| |||||||||||| ||||| || || | | || Sbjct 1119805 AAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCT 1119864 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| ||| || || || || ||||||| || || || || || | || ||||||||| Sbjct 1119865 TCCAATTGCTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTGTCC 1119924 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| ||| |||||| | | | ||| | ||||||||||| ||||| || Sbjct 1119925 TGAATCTTTGCCTTAACATTATCAATCGTATCCGAGCTCTCCACCTCCAAAGTAATGGTT 1119984 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||||||||| || || || ||||| Sbjct 1119985 TTCCCTGTCAGAGTCTTGACGAAAATCTGCAT 1120016 >seq4 Length=12062019 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| || || ||| |||| |||| || || || ||||| Sbjct 4155096 CTCCTTCTGGATGTTGTAATCTGCAAGAGTGCGCCCGTCCTCCAACTGCTTCCCAGCGAA 4155037 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || ||| || || || || | |||||||| || ||||||| || || Sbjct 4155036 GATGAGCCTCTGCTGATCAGGTGGAATCCCCTCCTTATCTTGAATTTTTGCTTTCACATT 4154977 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | || || ||||||||| | ||||||||||| || ||||| |||||||| Sbjct 4154976 ATCGATTGTATCAGAACTCTCCACCTCAAGCGTAATCGTCTTTCCGGTCAGCGTCTTCAC 4154917 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 4154916 GAAGATCTGCAT 4154905 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| || ||||||||| ||| ||| |||| || || || || || ||||| Sbjct 4154639 TCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAG 4154580 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| ||||||||||| ||||| | ||||||||||| || || |||||| Sbjct 4154579 ATCAATCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTG 4154520 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | || || || | || || |||||||| || || || || || Sbjct 4154519 TCGATCGTGTCAGAGCTTTCGACTTCAAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACG 4154460 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 4154459 AAGATCTGCAT 4154449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395045953817554