Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05]
6,074 sequences; 234,039,246 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq26 125 7e-24
seq11 89.7 5e-13
>seq26
Length=2022356
Score = 125 bits (138), Expect = 7e-24
Identities = 367/561 (65%), Gaps = 7/561 (1%)
Strand=Plus/Minus
Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260
|| || || ||||| ||||| || || ||||||| || | |||||||| || |||
Sbjct 1746706 AAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 1746647
Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320
||||| ||||| || || || ||||||||||||||||| || ||| ||| || |||
Sbjct 1746646 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTTCCAGAGAAG 1746587
Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380
|| || || || || |||||| || |||| ||||| | || | | | | ||
Sbjct 1746586 AAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCG-TC 1746528
Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440
| |||||||| ||||| |||| ||| || | | | || |||||| | ||
Sbjct 1746527 G--ATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGACGGCG 1746470
Query 14441 TTAAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498
| || | | | ||| || || ||| |||| ||||| || |||| || | ||||
Sbjct 1746469 TGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTG--ATGTAAGTTTCAAGGAGGAGACTAT 1746412
Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558
|||| || ||||| || ||||| || || || || || ||||| || | ||| || |
Sbjct 1746411 ACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCTCGG 1746352
Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618
| ||| || || || | |||| | |||||| || |||||||| |
Sbjct 1746351 AGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCATCGGAGG 1746292
Query 14619 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCC 14678
||||||| || || | | || | || |||| | || | | | | || ||| ||
Sbjct 1746291 CTGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTAAGAGTTTCCC 1746232
Query 14679 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTT 14738
| | | || |||| || ||||| ||||| || | |||||||| || | ||||
Sbjct 1746231 AGTGGCGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGGCTTCGGCTT 1746172
Query 14739 TTTTATACATTACCCATATTT 14759
| || |||||| |||||| ||
Sbjct 1746171 TCTTGTACATTTCCCATACTT 1746151
>seq11
Length=8132550
Score = 89.7 bits (98), Expect = 5e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263
|| ||||| ||||| |||||||||||||||||| ||||| || ||||| || || ||
Sbjct 4142808 CAAGCAAAGTCACAGTGAAGGCCCTCATCTCTAGATATAAGCTCATTTGAGAACGTCAAA 4142749
Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302
|||||||||| ||| | ||||| | ||| || ||||||
Sbjct 4142748 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAAAATTGCA 4142710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482308977910320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |