Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq26 125 7e-24 seq11 89.7 5e-13 >seq26 Length=2022356 Score = 125 bits (138), Expect = 7e-24 Identities = 367/561 (65%), Gaps = 7/561 (1%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || || ||||| ||||| || || ||||||| || | |||||||| || ||| Sbjct 1746706 AAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 1746647 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || || || ||||||||||||||||| || ||| ||| || ||| Sbjct 1746646 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTTCCAGAGAAG 1746587 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || || || || |||||| || |||| ||||| | || | | | | || Sbjct 1746586 AAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCG-TC 1746528 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | |||||||| ||||| |||| ||| || | | | || |||||| | || Sbjct 1746527 G--ATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGACGGCG 1746470 Query 14441 TTAAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498 | || | | | ||| || || ||| |||| ||||| || |||| || | |||| Sbjct 1746469 TGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTG--ATGTAAGTTTCAAGGAGGAGACTAT 1746412 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||| || ||||| || ||||| || || || || || ||||| || | ||| || | Sbjct 1746411 ACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCTCGG 1746352 Query 14559 ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14618 | ||| || || || | |||| | |||||| || |||||||| | Sbjct 1746351 AGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCATCGGAGG 1746292 Query 14619 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCC 14678 ||||||| || || | | || | || |||| | || | | | | || ||| || Sbjct 1746291 CTGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTAAGAGTTTCCC 1746232 Query 14679 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTT 14738 | | | || |||| || ||||| ||||| || | |||||||| || | |||| Sbjct 1746231 AGTGGCGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGGCTTCGGCTT 1746172 Query 14739 TTTTATACATTACCCATATTT 14759 | || |||||| |||||| || Sbjct 1746171 TCTTGTACATTTCCCATACTT 1746151 >seq11 Length=8132550 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| ||||| |||||||||||||||||| ||||| || ||||| || || || Sbjct 4142808 CAAGCAAAGTCACAGTGAAGGCCCTCATCTCTAGATATAAGCTCATTTGAGAACGTCAAA 4142749 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 |||||||||| ||| | ||||| | ||| || |||||| Sbjct 4142748 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAAAATTGCA 4142710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482308977910320