Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05]
6,074 sequences; 234,039,246 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq10 98.7 8e-16
>seq10
Length=8461613
Score = 98.7 bits (108), Expect = 8e-16
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || | ||| || | |||||| || || ||||| |||||||| || || ||
Sbjct 2238567 CCACCACGGAGACGAAGAACAAGGTGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCT 2238626
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | | ||| ||||||||||| || ||| ||||||| ||||| ||||| |||
Sbjct 2238627 AAAGTCCTCCCATCCTCCAATTGTTTCCCGGCAAAGATAAGCCTTTGCTGATCTGGGGGG 2238686
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGC--TCGG 18276
| ||||||||||| ||| | | |||||| || | ||| ||| | ||
Sbjct 2238687 ATTCCTTCCTTATCCTGAATCTTTGCCTTGAC--GTTATCGATTGTATCCGAACTTTCCA 2238744
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| | |||||| |||| || ||||| || || |||||||| ||||||
Sbjct 2238745 CCTCCAAGGTGATTGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCATT 2238794
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || || || || | ||| || ||||| || ||||| ||||| || || |||
Sbjct 2239023 CCCCCACGAAGCCTGAGGACAAGGTGGAGAGTTGACTCCTTTTGGATGTTATAATCAGCC 2239082
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| || | || |||| ||||| || || |||| || | ||||| || ||
Sbjct 2239083 AAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGAGGG 2239142
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||||||||| || |||| |||||| | ||| ||||| |||| |
Sbjct 2239143 ATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCAATCGTGTCGGAACTCTCGACT 2239202
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||||| ||||||||||||| ||||| || || ||||||||
Sbjct 2239203 TCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGACGAAGATTTGCAT 2239249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379315918349130
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |