Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq26 205 8e-48 seq10 127 2e-24 seq14 107 2e-18 seq5 104 2e-17 seq13 96.9 3e-15 seq4 93.3 4e-14 seq2 87.8 2e-12 seq9 82.4 7e-11 >seq26 Length=2022356 Score = 205 bits (226), Expect = 8e-48 Identities = 411/601 (68%), Gaps = 14/601 (2%) Strand=Plus/Plus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 |||| |||||| ||||| |||| || | | ||| | |||||||| || || ||||| Sbjct 1746124 TTTG-CATGTTCCCGATCCAATACCCGCAAGTATGGGAAATGTACAAGAAAGCCGAAGCC 1746182 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTC 57659 || |||||||||| ||||||||| || || || |||||| || | ||||| | || Sbjct 1746183 TCCTTTTGGACCGCCGAAGAAGTCGATCTCTCGTCGGATCTACGCCACTGGGAAACTCTT 1746242 Query 57660 AAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGT 57719 | || || | | || || | ||||| | || || || || || ||||||||| Sbjct 1746243 ACCGACGGCGAACGCCACTTCATCACTCACGTCCTCGCCTTCTTTGCAGCCTCCGATGGT 1746302 Query 57720 ATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGA 57779 || || ||| ||| | | || | || | ||||| ||| | | ||||| | Sbjct 1746303 ATCGTCCTCGAAAATCTCGCCGTCCGGTTCATGAAGGAAGTCCAAATCTCCGAGGCTCG- 1746361 Query 57780 TGC-TTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACT 57838 ||| || || || || ||| | ||||| ||||| | || || || |||||| || || Sbjct 1746362 TGCGTTCTATGGCTTCCAAATCGCCATCGAAAATATCCACTCCGAGATGTATAGTCTCCT 1746421 Query 57839 CATCGATACGTACGTGAAGGA---CAACGACGAGAAACGTAGACTGTTCAACGCGATCGA 57895 | | || || ||| | ||||| |||||| |||| | | || ||| |||| |||| Sbjct 1746422 CCTTGAAACTTACATCAAGGACTCCAACGAAAAGAACC---GGCTCTTCCACGCCGTCGA 1746478 Query 57896 AACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCAC 57955 |||| |||| | || ||||| || |||||| || | |||||||| | || | Sbjct 1746479 AACAGTGCCATGTGTGGCTAAGAAAGCTGAGTGGGCATTGAAATGGATCGA---CGGTTC 1746535 Query 57956 GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGG 58015 || || |||||||| |||||||||| || || ||| ||||| || ||||| || || Sbjct 1746536 GGAAACTTTCGCCGAACGGCTAATCGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGG 1746595 Query 58016 CAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTA 58074 || || ||| || ||||||||| | || || ||||| | ||||| || | || || Sbjct 1746596 AAGTTTCTGC-GCGATATTTTGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCT 1746654 Query 58075 GCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACT 58134 |||||||| || || || || || ||||||||| ||||| || ||| | |||||| Sbjct 1746655 CAAACGAGTTAATCTCACGAGATGAAGGTCTCCATTGCGATTTCGCTTGCTTGCTGTACT 1746714 Query 58135 C 58135 | Sbjct 1746715 C 1746715 >seq10 Length=8461613 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||| |||| |||||||| |||||| |||| || || ||| Sbjct 2239249 ATGCAAATCTTCGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2239190 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | ||| ||||||||||||| | || |||||||| Sbjct 2239189 GACACGATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGGCATCCCTCCCGACCAA 2239130 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| || |||||| |||| ||| ||| || ||||||||| Sbjct 2239129 CAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCGTACTTTGGCTGATTATAAC 2239070 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||| || || ||||| || || || || || || Sbjct 2239069 ATCCAAAAGGAGTCAACTCTCCACCTTGTCCTCAGGCT 2239032 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || ||||| ||||| || || || |||| || || Sbjct 2239480 AAGATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATAACTCTCGAGGTCGAGAGT 2239421 Query 31250 TCCGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| |||| | | | ||| | ||||||||||| | || ||||| Sbjct 2239420 TCCGACACCATCGACAACGTTAAGGCCAAGA-TCCAAGACAAGGAAGGGATCCCACCCGA 2239362 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || || ||||| || |||||| | |||||| | || || ||||| Sbjct 2239361 CCAGCAAAGGCTCATCTTCGCCGGGAAACAGCTCGAAGACGGTCGTACCTTGGCGGATTA 2239302 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| || || || || ||||| || ||||| || | || | ||||||| Sbjct 2239301 TAACATCCAGAAGGAGTCAACTCTCCACCTGGTCCTCCGTCTTCGTGGCGGTA 2239249 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| |||| || ||||| |||||| | || || ||| || Sbjct 2238793 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTCG 2238734 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | ||||| || ||| | ||| |||||||| | || || || || Sbjct 2238733 GATACAATCGATAACGTCAAGGCAAAGATTCA-GGATAAGGAAGGAATCCCCCCAGATCA 2238675 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370 ||| | || || || || || ||||| ||||| || | |||| | ||| ||||||| Sbjct 2238674 GCAAAGGCTTATCTTTGCCGGGAAACAATTGGAGGATGGGAGGACTTT-AGCTGATTATA 2238616 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||| ||||| || || ||||| || || ||| Sbjct 2238615 ACATTCAGAAAGAGTCTACCCTTCACCTTGTTCTT 2238581 >seq14 Length=6982396 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| || ||||| || ||| | || |||||| ||| Sbjct 1120244 ATGCAAATCTTTGTCAAGACCCTGACGGGTAAAACCATAACCTTGGAAGTTGAAAGTTCC 1120185 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || |||||||||||| | ||||| || ||| Sbjct 1120184 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCGCCAGATCAG 1120125 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || || || || ||| | || ||| | ||| || ||||||||| Sbjct 1120124 CAAAGGCTTATCTTTGCAGGGAAGCAGCTCGAGGACGGTCGAACTTTGGCTGATTATAAC 1120065 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| ||||| ||||| |||||| |||| Sbjct 1120064 ATTCAGAAAGAGTCGACCCTTCATTTGGT 1120036 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||||||||| ||||| || || | || || || || Sbjct 1120016 ATGCAGATTTTCGTCAAGACTCTGACAGGGAAAACCATTACTTTGGAGGTGGAGAGCTCG 1119957 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || || | | | || || || |||||||||||| | || || || || Sbjct 1119956 GATACGATTGATAATGTTAAGGCAAAG-ATTCAGGACAAGGAAGGGATTCCACCAGATCA 1119898 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || || ||||| || || |||||||| | |||| || ||||| || Sbjct 1119897 GCAAAGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACAA 1119838 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || || || ||||| ||||| Sbjct 1119837 TATTCAGAAGGAGTCCACCCTTCACCTGGT 1119808 >seq5 Length=11097736 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| || || || || || || || || ||| |||| || ||| Sbjct 4356801 CAAAGATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATAACCCTCGAGGTCGAAT 4356860 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| |||| | |||||| | || ||||||||||| | ||||| | Sbjct 4356861 CCTCTGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCGCCGG 4356920 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || ||||| ||||| ||| | |||||| || | ||| | Sbjct 4356921 ACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCTTAGCCGACT 4356980 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || || ||||| || ||||| || || || | || ||||| || Sbjct 4356981 ACAACATCCAGAAGGAATCCACACTTCACCTCGTTCTCCGTCTCAGGGGTGG 4357032 >seq13 Length=7441454 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || || || || || || || ||| | || || ||| | || Sbjct 4972477 CATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCTTGGAGGTCGAATCCTC 4972536 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || |||||||||||| | || || ||||| Sbjct 4972537 CGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCGGACCA 4972596 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| |||||||| ||||| ||| | |||||| ||| | ||| ||||| Sbjct 4972597 ACAACGTCTCATATTCGCCGGCAAGCAGCTTGAAGACGGCCGGACCCTAGCCGACTATAA 4972656 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 4972657 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 4972689 >seq4 Length=12062019 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || | || |||||||| |||||| |||| || || Sbjct 4154218 AAGATGCAGATCTTCGTGAAAACCTTAACCGGCAAAACCATCACCCTCGAGGTGGAGAGC 4154277 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || |||||||||||| | || || || Sbjct 4154278 TCAGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGAT 4154337 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT--CTATGACTATGAGCGATT 31367 || ||||| | || ||||| ||||| || | |||||| | | || || | |||| Sbjct 4154338 CAACAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGACGGCCGAACCCT-TGCG-GATT 4154395 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || || ||||| ||||||||||| || |||||||| | || | ||||||| Sbjct 4154396 ACAATATCCAAAAGGAATCGACTCTCCACCTGGTACTCCGTCTCCGTGGCGGTA 4154449 >seq2 Length=14367614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || |||||||| ||||| ||||||||||| | || || || || Sbjct 9074504 CATGCAAATCTTTGTCAAGACTCTCACAGGTAAAACGATCACTTTGGAGGTAGAGAGCTC 9074563 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | ||||| | || ||| || || || | || || ||||| Sbjct 9074564 AGACACTATTGACAATGTCAAGGCCAAGATTCAGGATAAAGAGGGTATCCCACCAGACCA 9074623 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || || ||||| ||||| | ||||| | ||| | |||||||| Sbjct 9074624 GCAGAGGTTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTTGCTGATTATAA 9074683 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||| || || || ||||| |||| || Sbjct 9074684 CATTCAAAAGGAGTCAACCCTTCACTTGGTTCT 9074716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || || |||||||| || |||||| | || ||||| || Sbjct 9073821 ATGCAAATCTTTGTGAAAACCCTTACAGGCAAGACCATCACCCTTGAGGTTGAGAGCTCT 9073880 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | || ||||||||||| | || ||||||||| Sbjct 9073881 GACACTATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCTCCCGACCAG 9073940 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | || || || |||||||||||| | ||||| | || ||| || ||||| Sbjct 9073941 CAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGA-TGGCCGAACCCTAGCTGACTATAA 9073999 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || || |||| ||| | || | || |||| Sbjct 9074000 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGGCTCCGTGGTGGTA 9074049 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||||| ||||| || || |||||| | || ||||| || Sbjct 9074049 ATGCAAATCTTTGTCAAGACTCTCACAGGAAAGACTATCACCTTGGAGGTTGAGAGCTCT 9074108 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | || ||||||||||| | || || ||||| Sbjct 9074109 GACACTATTGATAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCAA 9074168 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | || || || |||||||||||| | ||||| | || ||| || ||||| Sbjct 9074169 CAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGA-TGGCCGAACCCTAGCTGACTATAA 9074227 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || ||| |||| ||| | || | || |||| Sbjct 9074228 CATCCAGAAGGAGTCCACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGTA 9074277 >seq9 Length=8984705 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || ||||| || || || || || || ||| | || ||||| || Sbjct 7052851 CATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACTATTACCTTGGAAGTTGAGAGTTC 7052910 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || ||| | || |||||||||||| | || || || || Sbjct 7052911 TGATACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCA 7052970 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || ||||| ||||||||||||||||| || | ||| | ||||| || Sbjct 7052971 ACAGAGGCTGATATTTGCTGGCAAACAGTTGGAGGATGGGAGGACACTTGCAGATTACAA 7053030 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || |||||||| || || || || |||| || Sbjct 7053031 TATCCAAAAAGAGTCAACCCTCCACTTGGTGCT 7053063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445732555186080