Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq26 147 3e-30 seq2 95.1 2e-14 >seq26 Length=2022356 Score = 147 bits (162), Expect = 3e-30 Identities = 566/886 (64%), Gaps = 10/886 (1%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| || || ||| ||||| || || || | ||| ||||| ||||| ||||| ||| Sbjct 1747009 GACATGACCGCCGCTTTCTGGTACTCTCCAACTCTTTTCTCGAAGAAATTGGTTTTGCCT 1746950 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAAT 33395 | ||| || || |||||| ||||||| || || | ||||||||||| | | Sbjct 1746949 TGCAACGAAATCAGTTCCATCCAATCAAAAGGGTTAGCCACATTGTAAATCCTCCCGTAC 1746890 Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 || || | | ||| | |||||||||||| || || || |||||| || | Sbjct 1746889 CCTAACGCCCCCAACAACCGATCTGCGACGAACTCGATGTACTGACTCATCAGCTCTCCG 1746830 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| || | | | || ||||| || | ||| || || || || Sbjct 1746829 TTCATCCCAACCAATGCGCACGGCAGAGCATCACATACAAACTCCCTCTCTATATCCACT 1746770 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGTTTAA 33573 || | | | || ||| ||| | ||||| ||| | | || | | | || Sbjct 1746769 GCGTCCCTCACTATCCCTCTCACGCTCTCTTCGCTCAGCTTTGACCGGAGGAGGGAGTA- 1746711 Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 || ||| || ||||||||||| || ||||| || |||| ||||| ||||| || | Sbjct 1746710 -CAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 1746652 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || | ||| ||||||| || |||||||| | ||||||||| | ||| ||| | Sbjct 1746651 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTTCCAG 1746592 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCGC 33750 | ||||| || ||||| || |||||| || || || | || | || | | | Sbjct 1746591 AGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAAC 1746532 Query 33751 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 ||| ||||| || ||||| || || ||||| ||||| |||| ||||| | Sbjct 1746531 CGTC---GATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGA 1746475 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 ||| | ||||| ||| ||||| || || || | ||||| || | | |||| Sbjct 1746474 CGGCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGAC 1746415 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 ||||||| || || || || ||||| ||||| || || || || ||||| | ||||| Sbjct 1746414 TATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCT 1746355 Query 33931 CGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCAC 33990 ||| || || ||||| | || || | || | |||||| || || ||||| Sbjct 1746354 CGGAGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCATCGG 1746295 Query 33991 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 34050 ||||||||| || || | || || | || || | |||| | || || | | Sbjct 1746294 AGGCTGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTAAGAGTTT 1746235 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | | ||| || | ||| |||||||| | |||||||| || || || | Sbjct 1746234 CCCAGTGGCGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGGCTTCGG 1746175 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 | || || ||||| | ||| | | | |||||||| ||||| || Sbjct 1746174 CTTTCTTGTACATTTCCCATACTTGCGGGTATTGGATCGGGAACAT 1746129 >seq2 Length=14367614 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | || |||||||| || || |||||| ||| ||| | | | Sbjct 5550742 GTTCCAGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTGA 5550801 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || | ||||| || || || || | ||||||||| || || || | ||||||| Sbjct 5550802 TAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAAC 5550861 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 ||||| ||||| ||||| | || || | | |||||| | |||||| | || | Sbjct 5550862 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCGAGG 5550921 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||||| ||||| || | || |||||| || || || || || Sbjct 5550922 GTTTTAAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATATATGAT 5550968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629769781098720