Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq26 141 1e-28 seq2 95.1 2e-14 >seq26 Length=2022356 Score = 141 bits (156), Expect = 1e-28 Identities = 260/377 (69%), Gaps = 8/377 (2%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || ||||||||||| || ||||| || |||| ||||| ||||| || | Sbjct 1746711 ACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 1746652 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | || | ||| ||||||| || |||||||| | ||||||||| | |||| || |||| Sbjct 1746651 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTTCCA 1746593 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCA 36325 || |||||||| ||||| || ||||| || || || | || | || | | | Sbjct 1746592 GAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAA 1746533 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | ||| ||||| || ||||| || || ||||| ||||| |||| ||| || Sbjct 1746532 CCGTC---GATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCG 1746476 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 | || | ||||| ||| ||||| || || || | || || |||| | ||| Sbjct 1746475 ACGGCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGA 1746416 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 |||||||| || || || || ||||| ||||| ||||| || || ||||| | |||| Sbjct 1746415 CTATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCC 1746356 Query 36506 TCGGTAATCTGTACTTC 36522 |||| || || ||||| Sbjct 1746355 TCGGAGATTTGGACTTC 1746339 >seq2 Length=14367614 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| || | || |||||||| || || |||||| ||| ||| | | | Sbjct 5550742 GTTCCAGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTGA 5550801 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || | ||||| || || || || | ||||||||| || || || | ||||||| Sbjct 5550802 TAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAAC 5550861 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 ||||| ||||| ||||| | | ||| | | |||||| | |||||| | || | Sbjct 5550862 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCGAGG 5550921 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 |||||||| ||||| || | || |||||| || || || || || Sbjct 5550922 GTTTTAAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATATATGAT 5550968 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | ||| |||| ||| | |||| || |||||| | ||| || Sbjct 5550398 TCCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGCAGCATTGGGACAATGCC 5550457 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||||||||| || || ||||| ||||| | || ||||| || || || Sbjct 5550458 ATTAGATGTACCATTTGTTCCACGAATATAACTTCCTGTGGCTCGAATGTTGTGAACAGA 5550517 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || ||| || | || || || || |||||||| || Sbjct 5550518 GACACCAATCCCTCCAGCTGATTTGCTAATAACAGCACACTCCTTCAAAGTATCATATAT 5550577 Query 66395 GCCCTCTATACTATCATCCATCAT 66418 || || ||||||||||| |||| Sbjct 5550578 TCCTTCAATACTATCATCTTTCAT 5550601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658122828230160