Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq10 105 7e-18 seq4 93.3 4e-14 seq14 89.7 5e-13 seq5 87.8 2e-12 seq2 82.4 8e-11 >seq10 Length=8461613 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||||||||| || || | ||| || |||||||| || Sbjct 2239053 GTTGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCG 2239112 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || || || |||||||| |||||||| ||||| |||||| || Sbjct 2239113 GCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTG 2239172 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| ||| || || | ||| | || ||||||||||| ||| Sbjct 2239173 ACGTTGTCAATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTT 2239232 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 2239233 TTGACGAAGATTTGCATA 2239250 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | || | ||| | || ||||| || || ||||||||||| | Sbjct 2239251 CCGCCACGAAGACGGAGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCCGCC 2239310 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||||||||| || || |||| || | |||||| ||||| || Sbjct 2239311 AAGGTACGACCGTCTTCGAGCTGTTTCCCGGCGAAGATGAGCCTTTGCTGGTCGGGTGGG 2239370 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||||| ||| ||| Sbjct 2239371 ATCCCTTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACC 2239430 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||||| ||||| ||||| || ||||| Sbjct 2239431 TCGAGAGTTATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2239477 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC- 139593 || || || || | ||| | ||| | ||||| ||||||||||| |||||||||||||| Sbjct 2238564 TGCCCACCACGGAGACGAAGAACAAGGTGAAGGGTAGACTCTTTCTGAATGTTATAATCA 2238623 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 ||| | || ||| || || | ||||| || ||| |||| || | ||||||||| || Sbjct 2238624 GCT-AAAGTCCTCCCATCCTCCAATTGTTTCCCGGCAAAGATAAGCCTTTGCTGATCTGG 2238682 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCT 139712 || || ||||| || || ||| | |||| || | | || | ||| || | | Sbjct 2238683 GGGGATTCCTTCCTTATC-CTGAATCTTTGCCTTGACGTTATCGATTGTATCCGAACTTT 2238741 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| | ||| | || || || ||||| || || || || || ||||| Sbjct 2238742 CCACCTCCAAGGTGATTGTTTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 2238793 >seq4 Length=12062019 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| |||||||| || || ||||| ||||| | |||| | ||| || | ||| Sbjct 4155108 GTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGCAAGAGTGCGCCCGTCCTCCAACTG 4155049 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || ||||| |||| || | |||||||| || || || || || || || ||| ||| Sbjct 4155048 CTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGAATCCCCTCCTTATCT-TGAATTT 4154990 Query 139681 TTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 ||| ||| | | || | ||| || | ||||||||||| || | |||||| |||| Sbjct 4154989 TTGCTTTCACATTATCGATTGTATCAGAACTCTCCACCTCAAGCGTAATCGTCTTTCCGG 4154930 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 ||| ||| || ||||| || ||||| Sbjct 4154929 TCAGCGTCTTCACGAAGATCTGCAT 4154905 >seq14 Length=6982396 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--G 139609 |||||| || |||| || |||||||| |||||||||||||| || || |||| | Sbjct 1120032 CAAAACCAAATGAAGGGTCGACTCTTTCTGAATGTTATAATCAGCCAAAGT--TCGACCG 1120089 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || || ||| |||| || | ||||||||| || || || ||||| ||| Sbjct 1120090 TCCTCGAGCTGCTTCCCTGCAAAGATAAGCCTTTGCTGATCTGGCGGAATTCCTTCCTTG 1120149 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| || || || | ||| | Sbjct 1120150 TCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAACTTTCAACTTCCAAGGTTATG 1120209 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || |||| || || || || |||||||| Sbjct 1120210 GTTTTACCCGTCAGGGTCTTGACAAAGATTTGCAT 1120244 >seq5 Length=11097736 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||||| || || || || || ||||| || ||| | |||| Sbjct 4357021 ACGGAGAACGAGGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCC 4356962 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||||||||| || || || |||| ||||||||||| || || || || ||||| || Sbjct 4356961 GTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCCGGCGGGATTCCTTCCTT 4356902 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || ||| | | || | ||||| | || || ||||| | ||| | Sbjct 4356901 GTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGGATTCGACCTCGAGGGTTAT 4356842 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | ||||| ||||| || ||||| Sbjct 4356841 GGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 4356806 >seq2 Length=14367614 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| || ||||| ||||| ||||||||||| | || | || Sbjct 7189416 CAAAACAAGGTGAAGTGTGGACTCCTTTTGGATGTTATAATCAGCAAGAGTTCGGCCATC 7189357 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| ||||| ||||||||| | |||| | |||||||| ||||| ||||||||||| || Sbjct 7189356 TTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGATCAGGAGGGATGCCTTCTTTATC 7189297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496026336340800