Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq26 136 6e-27 seq2 95.1 2e-14 >seq26 Length=2022356 Score = 136 bits (150), Expect = 6e-27 Identities = 382/584 (65%), Gaps = 2/584 (0%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || ||||||||||| || ||||| || |||| |||| ||||| || | Sbjct 1746711 ACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 1746652 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || | ||| ||||||| || |||||||| | ||||||||| | |||| || ||| Sbjct 1746651 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTTCCA 1746593 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || ||||| || ||||| || ||||| || | || | || | || | | Sbjct 1746592 GAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAA 1746533 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | | ||||| || ||||| || || ||||| ||||| |||| ||||| | | Sbjct 1746532 CCGTCGATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGACG 1746473 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || | ||||| ||| ||||| || || || | ||||| || | | |||||| Sbjct 1746472 GCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGACTA 1746413 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| || || || || ||||| ||||| || || || || ||||| | ||||||| Sbjct 1746412 TACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCTCG 1746353 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | || || ||||| | || || | || | |||||| || || || || | Sbjct 1746352 GAGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCATCGGAG 1746293 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 |||||||| || || | || || | || || || |||| | || || | | | Sbjct 1746292 GCTGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTAAGAGTTTCC 1746233 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || | | ||| || | ||| |||||||| | |||||||| || || || || Sbjct 1746232 CAGTGGCGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGGCTTCGGCT 1746173 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 || || ||||| | ||| | | | |||||||| ||||| || Sbjct 1746172 TTCTTGTACATTTCCCATACTTGCGGGTATTGGATCGGGAACAT 1746129 >seq2 Length=14367614 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | || |||||||| || || |||||| ||| ||||| | | Sbjct 5550742 GTTCCAGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTGA 5550801 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || | ||||| || || || || | ||||||||| || || || | ||||||| Sbjct 5550802 TAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAAC 5550861 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||| ||||| ||||| | | ||| | | |||||| | ||| || | || | Sbjct 5550862 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCGAGG 5550921 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||||| ||||| || | || |||||| || || || || || Sbjct 5550922 GTTTTAAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATATATGAT 5550968 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | ||| |||| ||| | |||| || |||||| | ||| || Sbjct 5550398 TCCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGCAGCATTGGGACAATGCC 5550457 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||||||||| || || ||||| ||||| |||| ||||| || || || Sbjct 5550458 ATTAGATGTACCATTTGTTCCACGAATATAACTTCCTGTGGCTCGAATGTTGTGAACAGA 5550517 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || ||| || | || || || || |||||||| || Sbjct 5550518 GACACCAATCCCTCCAGCTGATTTGCTAATAACAGCACACTCCTTCAAAGTATCATATAT 5550577 Query 80274 GCCCTCTATGCTATCATCAATCAT 80297 || || || |||||||| |||| Sbjct 5550578 TCCTTCAATACTATCATCTTTCAT 5550601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718214265441360