Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq26 129 6e-25 seq11 89.7 5e-13 >seq26 Length=2022356 Score = 129 bits (142), Expect = 6e-25 Identities = 372/563 (66%), Gaps = 11/563 (2%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || || || ||||| ||||| || || ||||||| || | |||||||| || ||| Sbjct 1746706 AAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 1746647 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAA 13987 ||||| ||||| || || || ||||||||||||||||| || ||| || || || || Sbjct 1746646 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGC-GCAGAAACTTCCAGAGAA 1746588 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||| || || || || |||||| || |||| ||||| | || | | | | | Sbjct 1746587 GAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCG-T 1746529 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 || |||||||| ||||| |||| ||| || | | | || |||||| | || Sbjct 1746528 CG--ATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGACGGC 1746471 Query 14108 ATTAAATAAATATTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 | || | | ||| || || ||| |||| ||||| || |||| || | ||| Sbjct 1746470 GTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTG--ATGTAAGTTTCAAGGAGGAGACTA 1746413 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTC 14224 ||||| || ||||| || ||||| || || || || || ||||| || ||| | ||| || Sbjct 1746412 TACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCA-CGAGCCTC 1746354 Query 14225 CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 || ||| |||||| || | |||| | |||||| || |||||||| Sbjct 1746353 GGAGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCATCGGA 1746294 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTT 14344 |||||||| || || | | || | || |||| | || | | | | || ||| Sbjct 1746293 GGCTGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTAAGAGTTTC 1746234 Query 14345 CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 ||| | | || |||| || ||||| ||||| || | |||||||| || | || Sbjct 1746233 CCAGTGGCGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGGCTTCGGC 1746174 Query 14405 TTTTTTATACATTACCCATATTT 14427 ||| || |||||| |||||| || Sbjct 1746173 TTTCTTGTACATTTCCCATACTT 1746151 >seq11 Length=8132550 Score = 89.7 bits (98), Expect = 5e-13 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||| |||||||||||||||||| ||||| || ||||| || || || Sbjct 4142808 CAAGCAAAGTCACAGTGAAGGCCCTCATCTCTAGATATAAGCTCATTTGAGAACGTCAAA 4142749 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 |||||||||| ||| | ||||| | ||| || |||||| |||| Sbjct 4142748 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAAAATTGCA-CAAA 4142706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479691576651600