Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05]
6,074 sequences; 234,039,246 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq26 131 2e-25
seq11 89.7 5e-13
>seq26
Length=2022356
Score = 131 bits (144), Expect = 2e-25
Identities = 367/561 (65%), Gaps = 7/561 (1%)
Strand=Plus/Minus
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
|| || || ||||| ||||| || || ||||||| || | |||||||| || |||
Sbjct 1746706 AAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 1746647
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776
||||| ||||| || || || ||||||||||||||||| || ||| ||| || |||
Sbjct 1746646 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTTCCAGAGAAG 1746587
Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836
|| || || || || |||||| || ||||| ||||| | || | | | ||
Sbjct 1746586 AAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCGT-- 1746529
Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896
|||||||| ||||| |||| ||| || | | | || |||||||| ||
Sbjct 1746528 -CGATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGACGGCG 1746470
Query 13897 TTGAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954
| ||| | | | ||| || || ||| |||| ||||| || |||| || | ||||
Sbjct 1746469 TGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTG--ATGTAAGTTTCAAGGAGGAGACTAT 1746412
Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014
|||| || ||||| || ||||| || || || || || ||||| || | ||| || |
Sbjct 1746411 ACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCTCGG 1746352
Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074
| ||| || ||| || | | || | ||||| || |||||||| |
Sbjct 1746351 AGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCATCGGAGG 1746292
Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14134
||||||| || || | | || | || |||| | || | | | | || ||| ||
Sbjct 1746291 CTGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTAAGAGTTTCCC 1746232
Query 14135 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14194
| | | || |||| || ||||| ||||| || | |||||||| || | ||||
Sbjct 1746231 AGTGGCGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGGCTTCGGCTT 1746172
Query 14195 TTTTATACATTACCCATATTT 14215
| || |||||| |||||| ||
Sbjct 1746171 TCTTGTACATTTCCCATACTT 1746151
>seq11
Length=8132550
Score = 89.7 bits (98), Expect = 5e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719
|| ||||| ||||| |||||||||||||||||| ||||| || ||||| || || ||
Sbjct 4142808 CAAGCAAAGTCACAGTGAAGGCCCTCATCTCTAGATATAAGCTCATTTGAGAACGTCAAA 4142749
Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758
|||||||||| ||| | ||||| | ||| || ||||||
Sbjct 4142748 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAAAATTGCA 4142710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478552463145360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |