Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq26 131 2e-25 seq11 89.7 5e-13 >seq26 Length=2022356 Score = 131 bits (144), Expect = 2e-25 Identities = 367/561 (65%), Gaps = 7/561 (1%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || || || ||||| ||||| || || ||||||| || | |||||||| || ||| Sbjct 1746706 AAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGAAAGTT 1746647 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| ||||| || || || ||||||||||||||||| || ||| ||| || ||| Sbjct 1746646 AATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTTCCAGAGAAG 1746587 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 || || || || || |||||| || ||||| ||||| | || | | | || Sbjct 1746586 AAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAACCGT-- 1746529 Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896 |||||||| ||||| |||| ||| || | | | || |||||||| || Sbjct 1746528 -CGATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGACGGCG 1746470 Query 13897 TTGAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 | ||| | | | ||| || || ||| |||| ||||| || |||| || | |||| Sbjct 1746469 TGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTG--ATGTAAGTTTCAAGGAGGAGACTAT 1746412 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 |||| || ||||| || ||||| || || || || || ||||| || | ||| || | Sbjct 1746411 ACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCTCGG 1746352 Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 | ||| || ||| || | | || | ||||| || |||||||| | Sbjct 1746351 AGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCATCGGAGG 1746292 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14134 ||||||| || || | | || | || |||| | || | | | | || ||| || Sbjct 1746291 CTGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTAAGAGTTTCCC 1746232 Query 14135 AATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14194 | | | || |||| || ||||| ||||| || | |||||||| || | |||| Sbjct 1746231 AGTGGCGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGGCTTCGGCTT 1746172 Query 14195 TTTTATACATTACCCATATTT 14215 | || |||||| |||||| || Sbjct 1746171 TCTTGTACATTTCCCATACTT 1746151 >seq11 Length=8132550 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||| |||||||||||||||||| ||||| || ||||| || || || Sbjct 4142808 CAAGCAAAGTCACAGTGAAGGCCCTCATCTCTAGATATAAGCTCATTTGAGAACGTCAAA 4142749 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||||| ||| | ||||| | ||| || |||||| Sbjct 4142748 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAAAATTGCA 4142710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478552463145360