Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq9 107 1e-18 seq4 91.5 1e-13 seq1649 82.4 6e-11 >seq9 Length=8984705 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | | |||||| |||| || ||| ||||| | ||||||||| | Sbjct 7053078 CCTCCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTGTAATCTGCA 7053019 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || ||||| |||||||| ||||| |||| | ||||||||| | || Sbjct 7053018 AGTGTCCTCCCATCCTCCAACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCTGGAGGG 7052959 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| |||| || || ||| || || | ||| || Sbjct 7052958 ATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAACT 7052899 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || || || || |||||||||||||| Sbjct 7052898 TCCAAGGTAATAGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 7052852 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | | ||||||||| || ||| ||||| | ||||||||| | Sbjct 7046187 CCTCCACGCAGACGCCAG-CCAAATGGAGGGTTGACTCTTTTTGGATATTGTAATCTGCA 7046129 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || ||||| |||||||||||||| |||| | ||||||||| | || Sbjct 7046128 AGTGTCCTCCCATCCTCCAACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGGG 7046069 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| |||| || || ||| || || | ||| || Sbjct 7046068 ATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAACT 7046009 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA-AAAATTTGCAT 43109 || | || ||||| ||| | || || | || ||| ||||||||||| Sbjct 7046008 TCCAAGGTAATAGTCTTT-CAGTGAGGGGCTTGACACAAAATTTGCAT 7045962 >seq4 Length=12062019 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||| |||| ||| |||||||| | ||||||||| | Sbjct 4154447 CCGCCACGGAGACGGAGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCA 4154388 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | ||| |||||||| || ||||| ||||||||||| | || Sbjct 4154387 AGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGAGGA 4154328 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | ||||| || | | ||||| ||| ||| || Sbjct 4154327 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTC-TGAGCTCTCCAC 4154269 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || | || || ||||| ||||||| |||||||| || || ||||| || || Sbjct 4154268 CTCGAGGGTGATGGTTTTGCCGGTTAAGGTTTTCACGAAGATCTGCATCTTGTT 4154215 >seq1649 Length=3542 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | | |||||| |||| || ||| ||||| | ||||||||| | Sbjct 582 CCTCCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTGTAATCTGCA 523 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || ||||| |||||||| ||||| |||| | ||||||||| | || Sbjct 522 AGTGTCCTCCCATCCTCCAACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCTGGAGGG 463 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| |||| || || ||| || || | ||| || Sbjct 462 ATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAACT 403 Query 43063 TCTACCGTTATAGTTTTTCC 43082 || | || ||||| ||||| Sbjct 402 TCCAAGGTAATAGTCTTTCC 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381341368400292