Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq26 143 4e-29 seq2 89.7 7e-13 >seq26 Length=2022356 Score = 143 bits (158), Expect = 4e-29 Identities = 390/591 (66%), Gaps = 16/591 (3%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| ||| || ||||||||||| || ||||| ||||||| ||||| ||||| || | Sbjct 1746711 ACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 1746652 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | || | ||| ||||||| || |||||||| | ||||||||| | |||| || |||| Sbjct 1746651 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCG-CGCAGAAACTTCCA 1746593 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCA 42232 || ||||| || ||||| || ||||| || || || | || | || | | | Sbjct 1746592 GAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAA 1746533 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | ||| ||||| || ||||| || || ||||| ||||| |||| ||||| Sbjct 1746532 CCGTC---GATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCG 1746476 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 | ||| | ||||| ||| ||||| || || || | || || || | | ||| Sbjct 1746475 ACGGCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGA 1746416 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 |||||||| || || || || ||||| ||||| || || || || ||||| | ||| Sbjct 1746415 CTATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCC 1746356 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 |||| | || ||||| | || || | || | ||||||| || || || || Sbjct 1746355 TCGGAGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCATCG 1746296 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTA 42532 ||||||||| || || | || || | || || | |||| ||| | ||| Sbjct 1746295 GAGGCTGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCG-CCGTCGGTAAGAGT 1746237 Query 42533 TTCCAATCATTG----ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 |||| || || | ||| || | ||| |||||||| | |||||||| || || Sbjct 1746236 TTCC---CAGTGGCGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGGC 1746180 Query 42589 TTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 ||| || || || ||||| | ||| | | | ||||| || ||||| || Sbjct 1746179 TTCGGCTTTCTTGTACATTTCCCATACTTGCGGGTATTGGATCGGGAACAT 1746129 >seq2 Length=14367614 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | ||| |||| ||| | |||| || |||||| | ||| || Sbjct 5550398 TCCTCCTTGATCAACATAACGAGCAGTGTCATTGAACACTCGCAGCATTGGGACAATGCC 5550457 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| |||||| || || ||||| ||||| |||| ||||| ||| || || Sbjct 5550458 ATTAGATGTACCATTTGTTCCACGAATATAACTTCCTGTGGCTCGAATGTTGTGAACAGA 5550517 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || || || ||| || | || || || || |||||||| || Sbjct 5550518 GACACCAATCCCTCCAGCTGATTTGCTAATAACAGCACACTCCTTCAAAGTATCATATAT 5550577 Query 72357 GCCCTCTATACTATCATCCATCAT 72380 || || ||||||||||| |||| Sbjct 5550578 TCCTTCAATACTATCATCTTTCAT 5550601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671088243756240