Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq10 95.1 1e-14 seq4 89.7 5e-13 seq5 84.2 2e-11 >seq10 Length=8461613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | | |||||| | ||||| || ||||| ||||||||||||||||| | Sbjct 2238795 CCTCCACGAAGCCTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCAGCC 2238854 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| ||| || || || || || || |||||| |||||| || || || || Sbjct 2238855 AAGGTCCTCCCGTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGTTGTTGGTCTGGTGGG 2238914 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || || || | | || | |||||||| | || || Sbjct 2238915 ATCCCTTCCTTATCTTGGATCTTGGCCTTAACGTTATCAATCGTGTCCGAGCTCTCGACC 2238974 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || ||||| ||||| || || |||||||| Sbjct 2238975 TCCAAGGTTATTGTCTTTCCTGTCAAGGTTTTGACAAAGATTTGCAT 2239021 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| ||||| ||||| || || | ||| || || ||||| || Sbjct 2239053 GTTGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCG 2239112 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || || || || |||||||| |||||||| ||||| ||||| || Sbjct 2239113 GCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTG 2239172 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | || ||||| | || | || ||||||||||| ||| Sbjct 2239173 ACGTTGTCAATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTT 2239232 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| ||||||||| Sbjct 2239233 TTGACGAAGATTTGCATA 2239250 >seq4 Length=12062019 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||| || || || ||||| ||| || |||| ||| ||||| || Sbjct 4154651 TGAAGGGTTGATTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 4154592 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || ||||| |||||| || || || || ||||| ||||| || ||||| || || Sbjct 4154591 TTGCCAGCGAAGATCAATCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTG 4154532 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | |||||| | | ||| ||||||| ||| | ||||||||||| Sbjct 4154531 GCCTTAACGTTGTCGATCGTGTCAGAGCTTTCGACTTCAAGAGTGATGGTCTTGCCGGTT 4154472 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | ||||| ||||| || |||||| Sbjct 4154471 AGGGTTTTGACGAAGATCTGCATA 4154448 >seq5 Length=11097736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 ||| | ||| | |||| ||| ||||| || || |||||||| ||| | |||| Sbjct 4357021 ACGGAGAACGAGGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCC 4356962 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||||||| || || || || |||| ||||||||||| || || || || ||||| || Sbjct 4356961 GTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCCGGCGGGATTCCTTCCTT 4356902 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| || || ||| | | || | ||||| | || ||| || || | || | Sbjct 4356901 GTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGGATTCGACCTCGAGGGTTAT 4356842 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || || | ||||| ||||| || ||||| Sbjct 4356841 GGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 4356806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506975904931680