Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05]
6,074 sequences; 234,039,246 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq26 122 1e-22
>seq26
Length=2022356
Score = 122 bits (134), Expect = 1e-22
Identities = 372/559 (67%), Gaps = 22/559 (4%)
Strand=Plus/Plus
Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081
|||||||||||||| || || | |||||||||||||| | |||||| |||||||| ||
Sbjct 1746156 TGGGAAATGTACAAGAAAGCCGAAGCCTCCTTTTGGACCGCCGAAGAAGTCGATCTCTCG 1746215
Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141
||| || | | ||||| |||| | || || || || | || || | |||
Sbjct 1746216 TCGGATCTACGCCACTGGGAAACTC---TTACCGACGGCGAACGCCACTTCATCACTCAC 1746272
Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200
| | ||||||||||| | ||||||||| |||||| ||| ||||| | | | || ||
Sbjct 1746273 GTCCTCGCCTTCTTTGCAGCCTCCGATGGTATCGTCCTCGAAAATCTCGCCGTC-CGGTT 1746331
Query 125201 CTCTCAAG--AGTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCATGAT 125257
| | ||| ||| | || | |||| |||||| || || || ||||||||| ||
Sbjct 1746332 C-ATGAAGGAAGTCCA-AATCTCCGAGG-CTCGTGCGTTCTATGGCTTCCAAATCGCCAT 1746388
Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCA 125317
|| || | ||||| || ||||| | || |||| | |||| || | | ||
Sbjct 1746389 CGAAAATATCCACTCCGAGATGTATAGTCTCCTCCTTGAAACTTACA-TCAAGGACTCCA 1746447
Query 125318 ACGTAAA-CACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTC 125376
||| ||| || |||||| |||| |||| || ||||| | | | ||| || |||
Sbjct 1746448 ACGAAAAGAACCGGCTCTTCCACGCCGTCGAAACAGTGCCATGTGTGGCTAAGAAAGCTG 1746507
Query 125377 AATGGGTGATTCGGTGGATCGATG--ACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434
| |||| | |||||||| | || || | | |||||| | || | ||
Sbjct 1746508 AGTGGGCATTGAAATGGATCGACGGTTCGGAAA-----CTTTCGCCGAACGGCTAATCGC 1746562
Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCA 125493
|| || ||| || || || ||||| || || ||||| ||| || || |||||| | |
Sbjct 1746563 TTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGC-GCGATATTTTGGTTAA 1746621
Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553
| |||||||| | ||||| ||| | || | |||||||| || || ||||| || |
Sbjct 1746622 AAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAG 1746681
Query 125554 GCCTACACTGTGACTTTGC 125572
| || || || || || ||
Sbjct 1746682 GTCTCCATTGCGATTTCGC 1746700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741002935080240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |