Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq26 122 1e-22 >seq26 Length=2022356 Score = 122 bits (134), Expect = 1e-22 Identities = 372/559 (67%), Gaps = 22/559 (4%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 |||||||||||||| || || | |||||||||||||| | |||||| |||||||| || Sbjct 1746156 TGGGAAATGTACAAGAAAGCCGAAGCCTCCTTTTGGACCGCCGAAGAAGTCGATCTCTCG 1746215 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||| || | | ||||| |||| | || || || || | || || | ||| Sbjct 1746216 TCGGATCTACGCCACTGGGAAACTC---TTACCGACGGCGAACGCCACTTCATCACTCAC 1746272 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200 | | ||||||||||| | ||||||||| |||||| ||| ||||| | | | || || Sbjct 1746273 GTCCTCGCCTTCTTTGCAGCCTCCGATGGTATCGTCCTCGAAAATCTCGCCGTC-CGGTT 1746331 Query 125201 CTCTCAAG--AGTTGACCATTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCATGAT 125257 | | ||| ||| | || | |||| |||||| || || || ||||||||| || Sbjct 1746332 C-ATGAAGGAAGTCCA-AATCTCCGAGG-CTCGTGCGTTCTATGGCTTCCAAATCGCCAT 1746388 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCA 125317 || || | ||||| || ||||| | || |||| | |||| || | | || Sbjct 1746389 CGAAAATATCCACTCCGAGATGTATAGTCTCCTCCTTGAAACTTACA-TCAAGGACTCCA 1746447 Query 125318 ACGTAAA-CACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTC 125376 ||| ||| || |||||| |||| |||| || ||||| | | | ||| || ||| Sbjct 1746448 ACGAAAAGAACCGGCTCTTCCACGCCGTCGAAACAGTGCCATGTGTGGCTAAGAAAGCTG 1746507 Query 125377 AATGGGTGATTCGGTGGATCGATG--ACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | |||||||| | || || | | |||||| | || | || Sbjct 1746508 AGTGGGCATTGAAATGGATCGACGGTTCGGAAA-----CTTTCGCCGAACGGCTAATCGC 1746562 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCA 125493 || || ||| || || || ||||| || || ||||| ||| || || |||||| | | Sbjct 1746563 TTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGC-GCGATATTTTGGTTAA 1746621 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 | |||||||| | ||||| ||| | || | |||||||| || || ||||| || | Sbjct 1746622 AAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAACGAGTTAATCTCACGAGATGAAG 1746681 Query 125554 GCCTACACTGTGACTTTGC 125572 | || || || || || || Sbjct 1746682 GTCTCCATTGCGATTTCGC 1746700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741002935080240