Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq14 113 3e-20 seq10 113 3e-20 seq9 105 5e-18 seq2 104 2e-17 seq13 100 2e-16 seq1649 86.0 5e-12 >seq14 Length=6982396 Score = 113 bits (124), Expect = 3e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || || |||||||| | | | || | ||||| ||||| Sbjct 1119814 TGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGC 1119873 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | ||||| | ||| || || |||||| ||||| ||||| ||| ||| Sbjct 1119874 TTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTTT 1119933 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || || ||||| | || || || || ||||||||||| ||||| Sbjct 1119934 GC-CTTAACATTATCAATCGTATCCGAGCTCTCCACCTCCAAAGTAATGGTTTTCCCTGT 1119992 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || || ||||| ||||| Sbjct 1119993 CAGAGTCTTGACGAAAATCTGCAT 1120016 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || ||||| ||||||||||| || ||||| || ||||| ||||| | | ||| || Sbjct 1120030 CTCAAAACCAAATGAAGGGTCGACTCTTTCTGAATGTTATAATCAGCCAAAGTTCGACCG 1120089 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 || || | || || || || | || | | ||| || || ||||||||||| ||| Sbjct 1120090 TCCTCGAGCTGCTTCCCTGCAAAGATAAGCCTTTGCTGATCTGGCGGAATTCCTTCCTTG 1120149 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || || ||| ||| || | || ||||| ||| | |||| || || ||||| ||| Sbjct 1120150 TCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAACTTTCAACTTCCAAGGTTATG 1120209 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| || || ||||| |||||||| Sbjct 1120210 GTTTTACCCGTCAGGGTCTTGACAAAGATTTGCAT 1120244 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || ||||| ||||||||||| | | ||| |||| || | ||| Sbjct 1120270 TGGAGGGTTGACTCCTTTTGGATGTTGTAATCCGCCAAAGTTCGGCCGTCCTCGAGTTGC 1120329 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | || | | ||| ||||| ||||||||||||||||| || ||| Sbjct 1120330 TTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGGGGAATTCCTTCTTTGTCCTGGATCTTG 1120389 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| ||| |||| || || ||||| |||||||| || ||| Sbjct 1120390 GCCTTCACGTTGTCGATGGTGTCGGAGCTTTCAACTTCCAAGGTTATGGTTTTGCCCGTC 1120449 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| |||||||| Sbjct 1120450 AGGGTCTTGACAAAGATTTGCAT 1120472 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAAT-CGCTTAGAATTCTCGCGTCTTCTAATTG 15219 || ||||| || || ||||| |||||||||| |||| || |||| |||| || | || Sbjct 1120498 TGGAGGGTTGACTCCTTTTGGATGTTGTAATCCGCTAAG-GTTCTGCCGTCCTCGAGCTG 1120556 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | || | | ||| ||||| ||| |||||||| ||||| || || Sbjct 1120557 CTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTT 1120616 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| ||| |||| || || | ||| ||||||||||| || Sbjct 1120617 GGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCGACTTCCAGGGTTATGGTTTTACCCGT 1120676 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || || |||||||| Sbjct 1120677 CAGGGTCTTGACGAAGATTTGCAT 1120700 >seq10 Length=8461613 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGC 15207 || ||||| | ||||||||| || || ||||||||||||||||| || || | ||| | Sbjct 2238807 CTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCAGCCAAG-GTCCTCCC 2238865 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||| || | || || || ||| | ||||||||||||||||| ||| || ||||| || Sbjct 2238866 GTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTT 2238925 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || || ||| ||| || | || || || || | || || || ||||| || Sbjct 2238926 ATCTTGGATCTTGGCCTTAACGTTATCAATCGTGTCCGAGCTCTCGACCTCCAAGGTTAT 2238985 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||||| ||||| ||||| |||||||| Sbjct 2238986 TGTCTTTCCTGTCAAGGTTTTGACAAAGATTTGCAT 2239021 >seq9 Length=8984705 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || |||||||| || |||||||| || | ||| | || || Sbjct 7053060 ACCAAGTGGAGGGTTGACTCTTTTTGGATATTGTAATCTGCAAGTGTCCTCCCATCCTCC 7053001 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || ||||||||||| |||||| | ||||| || || || ||||| ||||| Sbjct 7053000 AACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGG 7052941 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| |||||| | || |||||||| | | || || || |||||||| || || Sbjct 7052940 ATCTTAGCT-TTTACATTGTCAATGGTATCAGAACTCTCAACTTCCAAGGTAATAGTCTT 7052882 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || |||||||||||||| Sbjct 7052881 TCCAGTGAGGGTCTTGACAAAAATTTGCAT 7052852 >seq2 Length=14367614 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || ||||| ||||| ||||| || | || | ||||| Sbjct 9074714 AACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCAGCAAGTGTCCTTCCATCTTC 9074655 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| ||||| | ||||| | || ||||| ||| || || ||||| || Sbjct 9074654 AAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTG 9074595 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| ||| ||| | || || || || | ||||| || || || || ||||| Sbjct 9074594 AATCTTGGCCTTGACATTGTCAATAGTGTCTGAGCTCTCTACCTCCAAAGTGATCGTTTT 9074535 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||| ||||| || ||||| |||||||| Sbjct 9074534 ACCTGTGAGAGTCTTGACAAAGATTTGCAT 9074505 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| |||||||| || || || ||||| || || ||| ||| | ||||| Sbjct 9074257 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCTAGGGTTCGGCCATCTTCA 9074198 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||||||||| | || | | ||||||||| || |||||||| ||||| Sbjct 9074197 AGCTGTTTGCCAGCAAAAATAAGCCTTTGTTGGTCAGGAGGGATTCCTTCCTTGTCTTGG 9074138 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || || || | || || || ||||| || || || Sbjct 9074137 ATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCAACCTCCAAGGTGATAGTCTTT 9074078 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| ||||| || ||||| ||||||||| Sbjct 9074077 CCTGTGAGAGTCTTGACAAAGATTTGCATA 9074048 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || |||||||| || || ||||| || || || || ||| ||||| | ||| Sbjct 9074944 AACACCAAGTGAAGGGTAGATTCCTTTTGGATATTATAGTCAGCGAGAGTTCTCCCATCT 9074885 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || |||||||| | || | | ||| ||||| ||| || || || || || Sbjct 9074884 TCAAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTATCT 9074825 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || ||||| ||| ||| | || |||||||| | | || || || || || || || Sbjct 9074824 TGGATCTTTGC-CTTCACATTATCAATGGTATCTGAACTCTCAACCTCCAATGTGATAGT 9074766 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || |||||||||||||| Sbjct 9074765 CTTTCCCGTAAGAGTCTTCACAAAAATTTGCAT 9074733 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || ||||| || || ||| ||| | ||||| Sbjct 9074029 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCTAGGGTTCGGCCATCTTCA 9073970 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||||||||| | || | | ||| |||||| || |||||||| ||||| Sbjct 9073969 AGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCGGGAGGGATTCCTTCCTTGTCTTGG 9073910 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || || || | || || || | ||| ||||| || Sbjct 9073909 ATCTTAGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTG 9073850 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| ||||| |||||||| Sbjct 9073849 CCTGTAAGGGTTTTCACAAAGATTTGCAT 9073821 >seq13 Length=7441454 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || ||||| || ||| ||| | | ||||||| | || Sbjct 4972680 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCTAGGGTCCGGCCGTCTTCAAGCTGC 4972621 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| |||| | |||||||||||| ||| || ||||| ||||| || ||| Sbjct 4972620 TTGCCGGCGAATATGAGACGTTGTTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTG 4972561 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| ||| ||| || || ||||| ||||| ||||| || Sbjct 4972560 GCCTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATGGTCTTACCCGTT 4972501 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || ||||| Sbjct 4972500 AGGGTTTTCACGAAGATCTGCAT 4972478 >seq1649 Length=3542 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| ||||| ||||| || || ||||| ||||| || || || | ||| | ||| Sbjct 795 AAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTGCAAGTGTCCTCCCATCT 736 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || || ||||| | ||||| | ||||||||| ||| || || || || || Sbjct 735 TCAAGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCAGGTGGGATACCCTCCTTATCT 676 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| || || | || || || || | || || || || ||||||||| Sbjct 675 TGGATCTTGGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTAATGGTT 616 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||| || || |||||||| ||||| Sbjct 615 TTACCAGTCAAGGTCTTCACAAAAATCTGCAT 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362152389005634