Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 8e-16 seq14 96.9 3e-15 seq10 89.7 4e-13 >seq9 Length=8984705 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| |||| | | ||||| ||| | || ||||| ||||| ||||||||||| | Sbjct 7053080 TTCCTCCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTGTAATCTG 7053021 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | | ||||||| |||||| || ||| | || || ||||| ||||| | Sbjct 7053020 CAAGTGTCCTCCCATCCTCCAACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCTGGAG 7052961 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || || ||||| || || |||||| | | | | ||||| | ||| Sbjct 7052960 GGATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAA 7052901 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||| || || || || | || ||||||||||||||||| Sbjct 7052900 CTTCCAAGGTAATAGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 7052852 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | | ||| || |||| ||| | || |||||||||||||| || ||||| | Sbjct 1646380 TTCCTCCCCTAAGCCTCAAAACCAAGTGAAGAGTCGACTCCTTTTGAATGTTATAATCTG 1646439 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | | ||| | || || |||||||| |||||| |||| | |||||||||||| Sbjct 1646440 CAAGAGTTCGACCTTCTTCAAGCTGTTTGCCCGCAAAAATCAATCTCTGCTGATC 1646494 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| ||| | || |||||||||||||| |||||||| || | || || | ||| Sbjct 7042450 AACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCTGCAAGGGTCTTCCCATCC 7042391 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | ||||| ||||| ||| ||||||| |||||||| || Sbjct 7042390 TTAAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGGTC 7042353 >seq14 Length=6982396 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 ||| |||| ||| | || ||||||||||| || ||||||||||||| ||| | |||| Sbjct 1120260 TAAGACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCCGCCAAAGTTCGGCCGTC 1120319 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||| || || || || ||| | ||||| || ||||| ||| ||| | || |||||||| Sbjct 1120320 CTCGAGTTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGGGGAATTCCTTCTTTGTC 1120379 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 || || || || | | ||| || ||| || ||| | ||| ||||| Sbjct 1120380 CTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCAACTTCCAAGGTTATGGT 1120439 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | || |||||||| |||||||| Sbjct 1120440 TTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 1120472 >seq10 Length=8461613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| || || ||||| |||| || | |||||||||||||||| || Sbjct 2239053 GTTGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCG 2239112 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || | ||| || || || | ||| || ||||| ||||| || Sbjct 2239113 GCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTG 2239172 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | || ||| | ||| ||||| ||| |||||||| || || |||||| Sbjct 2239173 ACGTTGTCAATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTT 2239232 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || |||||||| Sbjct 2239233 TTGACGAAGATTTGCAT 2239249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414542110471156