Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq14 87.8 1e-12 >seq14 Length=6982396 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||| || | || ||||| || || ||||||||||||| |||| | | Sbjct 1119802 CGCAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCA 1119861 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||| ||| ||| || || | |||||| || | || || ||||| || Sbjct 1119862 TCTTCCAATTGCTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTG 1119921 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || | | |||||| || | | || |||| ||| Sbjct 1119922 TCCTGAATCTTTGCC---TTAACATTATCAATCGTATCCGAGCTCTCCACCTCCAAAGTA 1119978 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || ||||| || |||||||| ||||| Sbjct 1119979 ATGGTTTTCCCTGTCAGAGTCTTGACGAAAATCTGCAT 1120016 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || |||| || | || ||||| ||||| || |||||||| | |||| | | | Sbjct 1120258 CGTAAGACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCCGCCAAAGTTCGGCCG 1120317 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | |||||| ||| ||| || | | ||||||||||| ||| || |||||||| Sbjct 1120318 TCCTCGAGTTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGGGGAATTCCTTCTTTG 1120377 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | || |||||| | || ||| |||| ||| Sbjct 1120378 TCCTGGATCTTGGCC---TTCACGTTGTCGATGGTGTCGGAGCTTTCAACTTCCAAGGTT 1120434 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| ||||| || || || || || |||||||| Sbjct 1120435 ATGGTTTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 1120472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318754001890452