Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1649 93.3 3e-14 seq10 89.7 4e-13 seq9 82.4 5e-11 >seq1649 Length=3542 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | | || |||||||| || || ||| ||||| || ||||| || | Sbjct 810 CCTCCTCTAAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTC-TGC 752 Query 43955 AATTGACG-CTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || | | |||| || | || || || ||||| ||||||| ||| ||||| | || Sbjct 751 AAGTGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCAGGTGG 692 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||| || |||||| || || |||||| | ||| || || | |||||| Sbjct 691 GATACCCTCCTTATCTTGGATCTTGGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCCAC 632 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| || || ||||||||||| || ||||| Sbjct 631 CTCCAAAGTAATGGTTTTACCAGTCAAGGTCTTCACAAAAATCTGCAT 584 >seq10 Length=8461613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| ||||| |||||||| ||| | | |||| ||||||||||| || ||||| Sbjct 2238602 CTCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGTTTCCCGGCAAA 2238661 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || | || |||||| || | || | ||||| ||||| ||| ||| ||||| | Sbjct 2238662 GATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGAATCTTTGCCTTGACGTT 2238721 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | | ||||| | ||||| || | || |||||||| || || || ||||| || Sbjct 2238722 ATCGATTGTATCCGAACTTTCCACCTCCAAGGTGATTGTTTTTCCAGTCAAGGTCTTGAC 2238781 Query 44110 AAATATTTGCAT 44121 ||| || ||||| Sbjct 2238782 AAAAATCTGCAT 2238793 >seq9 Length=8984705 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| | | || |||||||| || || ||| ||||| || ||||| || | Sbjct 7053304 CCTCCTCTAAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTC-TGC 7053246 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || || | |||| || | || || || ||||| ||||||| ||| ||||| | || Sbjct 7053245 AAGTGTCCTCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCAGGTGGG 7053186 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAG-TATCTGCCGGCTCCAC 44073 | |||| ||| |||| || || |||||| | ||| | | || | |||||| Sbjct 7053185 ATACCTCCTT-ATCTTGGATCTTGGCTTTGACGTTGTCAATTGGTGTCAGAGCTCTCCAC 7053127 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| || || ||||||||||| || ||||| Sbjct 7053126 CTCCAAAGTAATGGTTTTACCAGTCAAGGTCTTCACAAA-ATCTGCAT 7053080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354751336922952