Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 8e-16 seq10 89.7 4e-13 seq14 82.4 6e-11 >seq9 Length=8984705 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| || | | || |||||| || || || || |||||||| || |||||||| Sbjct 7053080 TTCCTCCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTGTAATCTG 7053021 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | || | ||| ||||| |||||||| ||| | || |||||||||||||| | Sbjct 7053020 CAAGTGTCCTCCCATCCTCCAACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCTGGAG 7052961 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| ||||| || || ||| || | | ||| | ||| | || Sbjct 7052960 GGATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAA 7052901 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| |||||| || || || || | || ||||||||||||||||| Sbjct 7052900 CTTCCAAGGTAATAGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 7052852 >seq10 Length=8461613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || ||||| ||||| || ||||| ||||| | | ||| | ||| ||||||||| Sbjct 2238591 TGAAGGGTAGACTCTTTCTGAATGTTATAATCAGCTAAAGTCCTCCCATCCTCCAATTGT 2238650 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| | |||||||| || ||||| ||| | ||||| || || ||| ||| Sbjct 2238651 TTCCCGGCAAAGATAAGCCTTTGCTGATCTGGGGGGATTCCTTCCTTATCCTGAATCTTT 2238710 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | | | ||| | |||| |||| ||| || ||||| || ||| Sbjct 2238711 GCCTTGACGTTATCGATTGTATCCGAACTTTCCACCTCCAAGGTGATTGTTTTTCCAGTC 2238770 Query 20186 AACGTTTTGACAAAAATTTGCATT 20209 || || ||||||||||| |||||| Sbjct 2238771 AAGGTCTTGACAAAAATCTGCATT 2238794 >seq14 Length=6982396 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||| || || || || || || || || |||||||| ||| ||| | ||| Sbjct 1119804 CAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCATC 1119863 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||||||| || || ||| |||| | ||| || ||||| || | ||||| ||||| Sbjct 1119864 TTCCAATTGCTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTGTC 1119923 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGG 20174 ||| ||| || || | ||| | ||| | || | ||| |||| ||||||| Sbjct 1119924 CTGAATCTTTGCCTTAACATTATCAATCGTATC-CGAGCTCTCCACCTCCAAAGTAATGG 1119982 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || |||| || ||||| ||||| ||||| Sbjct 1119983 TTTTCCCTGTCAGAGTCTTGACGAAAATCTGCAT 1120016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419556139270794