Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 8e-16 seq4 93.3 4e-14 seq14 89.7 4e-13 seq10 86.0 5e-12 >seq9 Length=8984705 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || ||||| || || |||||| |||||||| || || || | || | || Sbjct 7052835 AAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTTCTGCCATCT 7052776 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || ||||| || ||| | ||||||| | |||||| || || | || ||||||||| Sbjct 7052775 TCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 7052716 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| ||| ||| | | | |||||||| | | |||| ||| | || |||||| Sbjct 7052715 TGAATCTTCGCCTTCACATTATCGATGGTATCTGAACTCTCCACCTCTAAAGTGATGGTT 7052656 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||||||||||||||| |||||||| Sbjct 7052655 TTCCCAGTGAGAGTTTTCACAAATATCTGCAT 7052624 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || ||||| || || |||||| || ||||| || || || | || | || Sbjct 7045945 AAAACCAAATGGAGGGTTGACTCCTTCTGGATGTTATAGTCTGCAAGGGTTCTGCCATCT 7045886 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || ||||| || || | ||||||| | |||||| || || | || ||||||||| Sbjct 7045885 TCAAGCTGTTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 7045826 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTT-ATGGT 48693 ||| || ||| | | | |||||||| | | |||| ||| | || ||||| Sbjct 7045825 TGAATCTTTGCCTTCACATTGTCGATGGTATCCGAACTCTCCACCTCCAAAGTGGATGGT 7045766 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| |||||||||||||||||||| |||||||| Sbjct 7045765 TTTCCCGGTGAGAGTTTTCACAAATATCTGCAT 7045733 >seq4 Length=12062019 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||| | ||| | ||||| ||| |||||| || || |||||||| || Sbjct 4154903 CCTCCACGGAGCCTCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGC- 4154845 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||||||| |||||| ||| || | || || | |||||||||| | Sbjct 4154844 AAGGGTC-CTGCCGTCCTCCAACTGCTTCCCGGCGAATATCAACCTCTGCTGATCCGGAG 4154786 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||| ||| ||||| ||||| | || ||||| | | ||| Sbjct 4154785 GGATCCCTTCCTTATCCTGGATTTTTGCCTTGACGTTATCAATTGTATCCGAACTCTCTA 4154726 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || ||||| ||||| | ||||| || ||||||||||| Sbjct 4154725 CCTCCAGAGTAATAGTTTTCCCGGTCAAGGTTTTGACGAAAATCTGCAT 4154677 >seq14 Length=6982396 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || || | ||| || || |||||||| || ||| || |||||||| ||||||||| Sbjct 1120018 CCACCACGAAGCCTCAAAACCAAATGAAGGGTCGACTCTTTCTGAATGTTATAATCAGCC 1120077 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || ||| ||||||| |||||||| || | | || | | |||||||| ||| Sbjct 1120078 AAAGTTCGACCGTCCTCGAGCTGCTTCCCTGCAAAGATAAGCCTTTGCTGATCTGGCGGA 1120137 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | |||||||||| || || ||| | | | || ||||| |||| | || Sbjct 1120138 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCG--ATGGTGTCGGAACTTTCAA 1120195 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || | |||||||||||||| || || || || ||||| || |||||| Sbjct 1120196 CTTCCAAGGTTATGGTTTTACCCGTCAGGGTCTTGACAAAGATTTGCATC 1120245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTG 48582 ||||| ||| |||||| ||||| |||||||||||||| ||| | | || |||| || Sbjct 1119814 TGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAA-AGTCCTTCCATCTTCCAATTG 1119872 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | |||| || | |||||||| || | | |||||||||| ||| || Sbjct 1119873 CTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTT 1119932 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || ||||| | |||| ||| | || |||||||| || || Sbjct 1119933 TGCCTTAACATTATCAATCGTATCCGAGCTCTCCACCTCCAAAGTAATGGTTTTCCCTGT 1119992 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||||| || || |||||||||||| Sbjct 1119993 CAGAGTCTTGACGAAAATCTGCATC 1120017 >seq10 Length=8461613 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||| ||||| ||||||||||| || ||||||||||||| || ||| || | Sbjct 2239058 CTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAA 2239117 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||| || || || | | |||||||||| ||||| ||||| Sbjct 2239118 GATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTT 2239177 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || |||| | ||| |||| || |||||||| ||||| | |||||| || Sbjct 2239178 GTCAATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGAC 2239237 Query 48715 AAAAATCTGCAT 48726 || || ||||| Sbjct 2239238 GAAGATTTGCAT 2239249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421220016090074