Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05]
6,074 sequences; 234,039,246 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq9 98.7 8e-16
seq4 93.3 4e-14
seq14 89.7 4e-13
seq10 86.0 5e-12
>seq9
Length=8984705
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574
|| || ||||| || || |||||| |||||||| || || || | || | ||
Sbjct 7052835 AAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCAAGGGTTCTGCCATCT 7052776
Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634
|| ||||| || ||| | ||||||| | |||||| || || | || |||||||||
Sbjct 7052775 TCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 7052716
Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
||| ||| ||| | | | |||||||| | | |||| ||| | || ||||||
Sbjct 7052715 TGAATCTTCGCCTTCACATTATCGATGGTATCTGAACTCTCCACCTCTAAAGTGATGGTT 7052656
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || ||||||||||||||||| ||||||||
Sbjct 7052655 TTCCCAGTGAGAGTTTTCACAAATATCTGCAT 7052624
Score = 84.2 bits (92), Expect = 2e-11
Identities = 147/213 (69%), Gaps = 1/213 (0%)
Strand=Plus/Minus
Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574
|| || ||||| || || |||||| || ||||| || || || | || | ||
Sbjct 7045945 AAAACCAAATGGAGGGTTGACTCCTTCTGGATGTTATAGTCTGCAAGGGTTCTGCCATCT 7045886
Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634
|| ||||| || || | ||||||| | |||||| || || | || |||||||||
Sbjct 7045885 TCAAGCTGTTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 7045826
Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTT-ATGGT 48693
||| || ||| | | | |||||||| | | |||| ||| | || |||||
Sbjct 7045825 TGAATCTTTGCCTTCACATTGTCGATGGTATCCGAACTCTCCACCTCCAAAGTGGATGGT 7045766
Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| |||||||||||||||||||| ||||||||
Sbjct 7045765 TTTCCCGGTGAGAGTTTTCACAAATATCTGCAT 7045733
>seq4
Length=12062019
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| || | ||| | ||| | ||||| ||| |||||| || || |||||||| ||
Sbjct 4154903 CCTCCACGGAGCCTCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGC- 4154845
Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
|| ||| || ||||||||| |||||| ||| || | || || | |||||||||| |
Sbjct 4154844 AAGGGTC-CTGCCGTCCTCCAACTGCTTCCCGGCGAATATCAACCTCTGCTGATCCGGAG 4154786
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | |||||| ||| ||||| ||||| | || ||||| | | |||
Sbjct 4154785 GGATCCCTTCCTTATCCTGGATTTTTGCCTTGACGTTATCAATTGTATCCGAACTCTCTA 4154726
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || || ||||| ||||| | ||||| || |||||||||||
Sbjct 4154725 CCTCCAGAGTAATAGTTTTCCCGGTCAAGGTTTTGACGAAAATCTGCAT 4154677
>seq14
Length=6982396
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| || || | ||| || || |||||||| || ||| || |||||||| |||||||||
Sbjct 1120018 CCACCACGAAGCCTCAAAACCAAATGAAGGGTCGACTCTTTCTGAATGTTATAATCAGCC 1120077
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
|| ||| ||||||| |||||||| || | | || | | |||||||| |||
Sbjct 1120078 AAAGTTCGACCGTCCTCGAGCTGCTTCCCTGCAAAGATAAGCCTTTGCTGATCTGGCGGA 1120137
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677
| | |||||||||| || || ||| | | | || ||||| |||| | ||
Sbjct 1120138 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCG--ATGGTGTCGGAACTTTCAA 1120195
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| | |||||||||||||| || || || || ||||| || ||||||
Sbjct 1120196 CTTCCAAGGTTATGGTTTTACCCGTCAGGGTCTTGACAAAGATTTGCATC 1120245
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTG 48582
||||| ||| |||||| ||||| |||||||||||||| ||| | | || |||| ||
Sbjct 1119814 TGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAA-AGTCCTTCCATCTTCCAATTG 1119872
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||| || | |||| || | |||||||| || | | |||||||||| ||| ||
Sbjct 1119873 CTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTT 1119932
Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702
||| | | | || ||||| | |||| ||| | || |||||||| || ||
Sbjct 1119933 TGCCTTAACATTATCAATCGTATCCGAGCTCTCCACCTCCAAAGTAATGGTTTTCCCTGT 1119992
Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727
||||| || || ||||||||||||
Sbjct 1119993 CAGAGTCTTGACGAAAATCTGCATC 1120017
>seq10
Length=8461613
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
||||||||| ||||| ||||||||||| || ||||||||||||| || ||| || |
Sbjct 2239058 CTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAA 2239117
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | ||||| || || || | | |||||||||| ||||| |||||
Sbjct 2239118 GATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTT 2239177
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| || || |||| | ||| |||| || |||||||| ||||| | |||||| ||
Sbjct 2239178 GTCAATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGAC 2239237
Query 48715 AAAAATCTGCAT 48726
|| || |||||
Sbjct 2239238 GAAGATTTGCAT 2239249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421220016090074
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |