Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq8 118 6e-22 seq37 113 2e-20 seq3 111 8e-20 seq11 109 3e-19 seq14 107 1e-18 seq2 107 1e-18 seq16 105 3e-18 >seq8 Length=9139585 Score = 118 bits (130), Expect = 6e-22 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||||||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 5834542 AAAATCAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 5834601 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 5834602 TCTAACCAACTGAGCTAATAGGCC 5834625 Score = 89.7 bits (98), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCA--AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||||| ||| | | || |||| |||| | | |||||||| | ||||||||||||| Sbjct 1448783 AATTAATTTAAACTAATAAAATGGCACATGCAGGTCTCGAACCTGCAACCTTCGCGTTAT 1448724 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAAT 11524 |||||| ||||||| ||||||||||||||| Sbjct 1448723 TAGCACAACGCTCTAACCAACTGAGCTAAT 1448694 >seq37 Length=649016 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 || ||| || ||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 92913 AACAAAACATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 92854 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 92853 GCTCTAACCAACTGAGCTAATAGGCC 92828 >seq3 Length=13963513 Score = 111 bits (122), Expect = 8e-20 Identities = 85/101 (84%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || ||| |||| |||| | || || ||||||||| | | |||||||| ||||||||| Sbjct 5867284 AAGTATTGAATCAATACATAA---AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 5867340 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 5867341 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 5867381 >seq11 Length=8132550 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 368466 ATTGGCCCATGCACGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 368525 Query 11514 ACTGAGCTAATGGGCCGTC 11532 ||||||||||| |||| || Sbjct 368526 ACTGAGCTAATAGGCCCTC 368544 >seq14 Length=6982396 Score = 107 bits (118), Expect = 1e-18 Identities = 77/89 (87%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 6572945 AATAAAAAAACC---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 6573001 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 6573002 GACGCTCTAACCAACTGAGCTAATAGGCC 6573030 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3116770 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3116711 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 3116710 TGAGCTAATAGGCCG 3116696 >seq2 Length=14367614 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 4355035 AAACTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 4355094 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 4355095 CAACTGAGCTAATAGGCC 4355112 Score = 105 bits (116), Expect = 3e-18 Identities = 77/88 (88%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11445 AAAAATCAA-ATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||| ||||| ||| |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 468961 AAACATCAATATTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 468902 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 468901 ACGCTCTAACCAACTGAGCTAATAGGCC 468874 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 9863508 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9863449 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 9863448 TGAGCTAATAGGCC 9863435 >seq16 Length=5666189 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 150707 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 150766 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 150767 CTGAGCTAATAGGCC 150781 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261471842623624