Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 154 2e-33 seq4 140 5e-29 seq10 127 3e-25 seq15 118 2e-22 seq14 105 1e-18 >seq3 Length=13963513 Score = 154 bits (170), Expect = 2e-33 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| |||||||| ||| | ||||||||||||||||| |||||| Sbjct 4325210 GATAACATCCAGGGGATCACTAAGCCAGCCATCAGGCGTCTGGCTCGTCGTGGAGGAGTC 4325269 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||| || |||| || | || | |||||||| || || Sbjct 4325270 AAGCGTATCAGCGGCCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCTTTCTGGAG 4325329 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | || || | ||| || ||||||||| || |||||||| || | Sbjct 4325330 AACGTAATTCGCGACGCCGTTACCTACACTGAGCACGCTCGCCGGAAGACTGTTACGGCT 4325389 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| |||| ||||| ||||| | |||||||||| |||| ||||| || ||||| Sbjct 4325390 ATGGATGTCGTTTATGCCTTGAAGAGGCAAGGCCGTACTCTTTACGGTTTCGGCGGTTAA 4325449 >seq4 Length=12062019 Score = 140 bits (154), Expect = 5e-29 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | | || || || |||||||||||||| ||||| |||||||| || Sbjct 10502223 GCAAAGCGACACCGTAAGGTC-CTCCGTGATAACATCCAAGGGATCACTAAGCCAGCAAT 10502165 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| ||||||| | || ||||||||||| || || || |||| || |||| Sbjct 10502164 ACGGCGTTTGGCTCGAAGGGGAGGAGTCAAGCGAATCAGCGGTTTAATCTACGAGGAGAC 10502105 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||||||||| | ||| ||| || | |||||| || ||| || || Sbjct 10502104 TCGTGGAGTTCTGAAGATCTTCTTGGAGAACGTGATTCGTGATGCCGTCACCTACACTGA 10502045 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 |||||| | | ||||| || || | |||||| | || |||||| |||| Sbjct 10502044 GCACGCGAGGAGGAAGACCGTGACTGCTATGGATGTGGTTTATGCACTGAA 10501994 Score = 132 bits (146), Expect = 8e-27 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||||||||| ||||| || || || |||||||||||| | || || || Sbjct 10243008 GATAACATCCAAGGAATCACTAAGCCCGCCATTCGCCGTCTGGCTCGTAGAGGAGGTGTG 10243067 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || || ||| |||| ||||| | | | || |||||||| ||| | || Sbjct 10243068 AAGAGGATCAGCGGCTTGATCTACGAAGAAACCAGAGGAGTCTTGAAGATTTTCTTGGAG 10243127 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| | || || |||||||| | | | |||||||| || | Sbjct 10243128 AACGTGATTCGCGATGCTGTGACATACACTGAGCACGCAAGAAGGAAGACTGTTACTGCT 10243187 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || |||||||| | || ||| | | ||||||| ||||| ||||| Sbjct 10243188 ATGGATGTTGTTTACGCATTGAAGAGGCAGGGCAGGACTCTTTATGGCTTTGGTGGTTAA 10243247 Query 16700 TCTTCT 16705 |||| Sbjct 10243248 GATTCT 10243253 >seq10 Length=8461613 Score = 127 bits (140), Expect = 3e-25 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 |||||||||||||| || || ||||||||||| || || || | |||||||| | ||| Sbjct 1631855 CTTCGAGATAACATTCAGGGTATCACCAAGCCTGCGATTCGAAGGTTGGCTCGTAGAGGT 1631914 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || || ||| |||| || |||| |||| || | ||||||||| Sbjct 1631915 GGTGTGAAGAGGATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTC 1631974 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | || |||| ||| || | |||||| |||||||||| || |||||||| Sbjct 1631975 CTGGAAAATGTGATCCGTGACGCCGTTACCTATACGGAGCACGCTAGGCGAAAGACTGTT 1632034 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || ||||||| |||||||||| Sbjct 1632035 ACTGCCATGGACGTCGTCTATGC 1632057 Score = 114 bits (126), Expect = 2e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||||||||| || || ||||||||||| || || || | |||||||| | ||| Sbjct 1636210 CTCCGAGATAACATTCAGGGTATCACCAAGCCGGCGATTCGAAGGTTGGCTCGTAGAGGT 1636269 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || || ||| |||| || |||| |||| || | |||||||| Sbjct 1636270 GGTGTGAAGAGGATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTT 1636329 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | || |||| ||| || | |||||| |||||||||| || |||||||| Sbjct 1636330 CTGGAAAATGTAATCCGTGACGCGGTTACCTATACGGAGCACGCTAGGCGAAAGACTGTT 1636389 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || ||||||| ||||||| || Sbjct 1636390 ACTGCCATGGACGTCGTCTACGC 1636412 >seq15 Length=6219335 Score = 118 bits (130), Expect = 2e-22 Identities = 173/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| ||||| |||||||| ||||| ||| ||||||| ||||| Sbjct 2450437 CTCCGCGATAACATCCAAGGGATCACAAAGCCAGCCATCCGCCGTTTGGCTCGCCGTGGC 2450378 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| || || | | || || |||| || | || | || |||||| Sbjct 2450377 GGCGTTAAACGTATCAGCGGTCTTATTTACGAGGAGACGCGCGGCGTCCTCAAAATCTTC 2450318 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||| ||| || || | ||| ||||||||||| || || || ||| Sbjct 2450317 CTTGAAAACGTCATCAGAGACGCCGTTACCTACACCGAGCACGCCCGCCGCAAAACCGTC 2450258 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| |||| || || | || | |||||||||| |||| || ||||| Sbjct 2450257 ACCGCCATGGACGTCGTTTACGCGCTCAAGAGACAAGGCCGTACCCTTTACGGGTTTGGT 2450198 Query 16694 AGTTA 16698 |||| Sbjct 2450197 GGTTA 2450193 Score = 114 bits (126), Expect = 2e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 |||||||||||||||||||| ||||| ||||| |||||||| ||| |||| | | || Sbjct 1812877 CTTCGAGATAACATCCAAGGGATCACGAAGCCGGCTATCCGACGTTTGGCGAGGAGAGGC 1812936 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || ||| | ||||| |||| ||| | ||||||||||||||| Sbjct 1812937 GGAGTTAAGAGGATCAGCGGCTTGATTTATGAGGAGACTCGAGGTGTTTTGAAGATCTTT 1812996 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| || || | || || || || ||| | ||||| ||| Sbjct 1812997 TTGGAGAACGTGATCCGCGACGCCGTTACTTACACGGAACATGCTCGGAGAAAGACCGTC 1813056 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || |||||||| | || || || Sbjct 1813057 ACGGCCATGGATGTTGTTTACGC 1813079 >seq14 Length=6982396 Score = 105 bits (116), Expect = 1e-18 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| ||||| ||||| ||||| || || || | ||||||| || || |||| Sbjct 4689503 GAGACAACATTCAAGGGATCACGAAGCCTGCAATTCGAAGGTTGGCTCGACGAGGCGGAG 4689444 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | | || | | |||||||| | || | ||| | ||||| ||||| Sbjct 4689443 TGAAGAGGATTAGCGGCCTTATTTATGAAGAAACGCGAGGCGTTCTCAAGATTTTCCTTG 4689384 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | ||| |||| || || | ||||| |||||||| | | ||||| || || Sbjct 4689383 AAAACGTGATCCGCGACGCGGTTACGTATACTGAGCACGCCAGGAGGAAGACGGTAACTG 4689324 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || ||||| |||||| | || ||||| | ||||||||||||| ||| Sbjct 4689323 CTATGGATGTGGTTTATGCCTTGAAAAGACAGGGCCGAACCCTTTATGGTTTTGGCGGTT 4689264 Query 16698 AAT 16700 ||| Sbjct 4689263 AAT 4689261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069646499282