Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq26 134 2e-26 seq2 95.1 2e-14 >seq26 Length=2022356 Score = 134 bits (148), Expect = 2e-26 Identities = 382/586 (65%), Gaps = 6/586 (1%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || ||||||||||| || ||||| || |||| |||| ||||| || | Sbjct 1746711 ACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGAGA 1746652 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || | ||| ||||||| || |||||||| | ||||||||| | ||| ||||| Sbjct 1746651 AAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGCGCAGAAACTTCCAG 1746592 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCGC 33472 | ||||| || ||||| || |||||| || || || | || | || | | | Sbjct 1746591 AGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCGAAC 1746532 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 ||| ||||| || ||||| || || ||||| ||||| |||| ||||| | Sbjct 1746531 CGTC---GATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTTCGA 1746475 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 ||| | ||||| ||| ||||| || || || | ||||| || | | |||| Sbjct 1746474 CGGCGTGGAAGAGCCGGTTCTTTTCGTTGGAGTCCTTGATGTAAGTTTCAAGGAGGAGAC 1746415 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 ||||||| || || || || ||||| ||||| || || || || ||||| | ||||| Sbjct 1746414 TATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCACGAGCCT 1746355 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712 ||| || || ||||| | || || | || | |||||| || || || || Sbjct 1746354 CGGAGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATACCATCGG 1746295 Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33772 ||||||||| || || | || || | || || | |||| | || || | | Sbjct 1746294 AGGCTGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTAAGAGTTT 1746235 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 ||| | | ||| || | ||| |||||||| | |||||||| || || || | Sbjct 1746234 CCCAGTGGCGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGGCTTCGG 1746175 Query 33833 CCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 | || || ||||| | ||| | | |||||||| ||||| || Sbjct 1746174 CTTTCTTGTACATTTCCCATACTTGCGGGTATTGGATCGGGAACAT 1746129 >seq2 Length=14367614 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | || |||||||| || || |||||| ||| ||| | | | Sbjct 5550742 GTTCCAGCATTGAAAAGTGTCGGAGAAGCATGAGTGAACCATCTTTGAGACATCATGTGA 5550801 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || | ||||| || || || || | ||||||||| || || || | ||||||| Sbjct 5550802 TAAGTTTTTATAGCAGAATCAATGTCATCCTTATGAATTCCAACAGCAACCCTCATTAAC 5550861 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 ||||| ||||| ||||| | | ||| | | |||||| | |||||| | || | Sbjct 5550862 ATGTGTTGAGGCCTTTCTATAACCTTCCCTTGAACTTTCAAGAGGTAGGACCTCTCGAGG 5550921 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||||| ||||| || | || |||||| || || || || || Sbjct 5550922 GTTTTAAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATATATGAT 5550968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622899902733840