Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq4 100 3e-16 seq13 95.1 1e-14 seq10 91.5 1e-13 seq5 86.0 6e-12 seq2 84.2 2e-11 >seq4 Length=12062019 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 26760 TCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTA 26819 || ||||| ||||| | || || ||||| ||||| || ||| | |||||| |||| | Sbjct 4154212 TCGAACAAGATGCAGATCTTCGTGAAAACCTTAACCGGCAAAACCATCACCCTCGAGGTG 4154271 Query 26820 GA-ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACC 26878 || | | | ||||||||||| | ||||| ||||| ||||| ||||| || || Sbjct 4154272 GAGAGCTCA-GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCC 4154330 Query 26879 TCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG 26938 ||| |||||||| | | || | || |||||| ||||| ||||| | ||| | | Sbjct 4154331 TCCTGATCAACAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGACGGCCGAACCCTTGC 4154390 Query 26939 CGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || ||||| ||||| ||| |||| ||||| || Sbjct 4154391 GGATTACAATATCCAAAAGGAATCGACTCTCCACCTGGTACT 4154432 >seq13 Length=7441454 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| || || | || ||| | || | ||||| | Sbjct 4972478 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCTTGGAGGTCGAATCCTCC 4972537 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| ||||| || || || || ||| Sbjct 4972538 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCGGACCAA 4972597 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | || |||||| || || ||||| | | | | | |||||||||| Sbjct 4972598 CAACGTCTCATATTCGCCGGCAAGCAGCTTGAAGACGGCCGGACCCTAGCCGACTATAAC 4972657 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| |||||||| Sbjct 4972658 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 4972689 >seq10 Length=8461613 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || || ||||||||| | |||||| | || | ||| Sbjct 2238794 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2238735 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || ||||| | ||||| ||||||| || || ||||| || || || ||||| Sbjct 2238734 GGATACAATCGATAACGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2238675 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||||| || || | | ||| |||||| | || |||| || | | | ||| || |||| Sbjct 2238674 GCAAAGGCTTATCTTTGCCGGGAAACAATTGGAGGATGGGAGGA-CTTTAGCTGATTATA 2238616 Query 26947 ACATTCAAAAAGAATCTAC 26965 ||||||| ||||| ||||| Sbjct 2238615 ACATTCAGAAAGAGTCTAC 2238597 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | || || ||||| ||||| |||||||| || ||||| || Sbjct 2239418 CGACACCATCGACAACGTTAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCCGACCA 2239359 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||| ||||| | || ||| ||||| |||||||| | | | | | | || ||||| Sbjct 2239358 GCAAAGGCTCATCTTCGCCGGGAAACAGCTCGAAGACGGTCGTACCTTGGCGGATTATAA 2239299 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || ||| |||| |||||||| Sbjct 2239298 CATCCAGAAGGAGTCAACTCTCCACCTGGTCCT 2239266 >seq5 Length=11097736 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | || ||| |||| | ||||| Sbjct 4356803 AAGATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATAACCCTCGAGGTCGAATCC 4356862 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | |||||| ||||| ||||| ||||| || || || || Sbjct 4356863 TCTGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCGCCGGAC 4356922 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||| | ||||| | || |||||| || |||||||| | | | | | |||||| Sbjct 4356923 CAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCTTAGCCGACTAC 4356982 Query 26946 AACATTCAAAAAGAATCTAC 26965 ||||| || || ||||| || Sbjct 4356983 AACATCCAGAAGGAATCCAC 4357002 >seq2 Length=14367614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || | || ||||| | |||||| | || | || Sbjct 9074049 ATGCAAATCTTTGTCAAGACTCTCACAGGAAAGACTATCACCTTGGAGGTTGAGAGCTCT 9074108 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 9074109 GACACTATTGATAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCAA 9074168 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||| || |||| | |||||||| || ||||||| ||| | | ||| |||||||| Sbjct 9074169 CAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCCT-AGCTGACTATAA 9074227 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| || || || || || ||||| |||| || Sbjct 9074228 CATCCAGAAGGAGTCCACCCTCCATTTGGTGCT 9074260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478626057557280