Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq26 105 2e-17 >seq26 Length=2022356 Score = 105 bits (116), Expect = 2e-17 Identities = 334/510 (65%), Gaps = 17/510 (3%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT---GAACGTTCATTCGCGGAACGT 22494 || || || || ||||| |||||||||| || | ||| || |||| ||||| Sbjct 1746498 AAGAAAGCTGAGTGGGCATTGAAATGGATCGACGGTTCGGAAACTT---TCGCCGAACGG 1746554 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 || || || |||||| || ||||| |||||||| |||||| || || || || ||| Sbjct 1746555 CTAATCGCTTTTGCTTGCGTGGAAGGGATTTTCTTCTCTGGAAGTTTCTGCGCGATATTT 1746614 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||| ||||||| || | | ||||| || |||| || ||||| |||||||| ||| Sbjct 1746615 TGGTTAAAAAAGCGCGGGTTAATGCCTGGATTAACTTTCTCAAACGAGTTAATCTCACGA 1746674 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAA 22674 ||||| ||||| ||| |||||| || || |||| || | || | | ||| || Sbjct 1746675 GATGAAGGTCTCCATTGCGATTTCGCTTGCTTGCTGTA-CTCCCTCCTC-CGGTCA-AAG 1746731 Query 22675 CTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTT 22734 || | || | || | || | | | ||||| || | || | ||| Sbjct 1746732 CTGAGCGAAGAGAGCGTGAGAGGGATAGTGAGGGACGCAGTGGATATAGAGAGGGAGTTT 1746791 Query 22735 ATTTGCGAGGCGTTACCAGTAAGTCTCATTGGT----ATCAATGCCGAATCAATGAGTAC 22790 | || || || | || || | ||||||| || || | || |||||| Sbjct 1746792 GTATGTGATGCTCTGCC-GTGCG---CATTGGTTGGGATGAACGGAGAGCTGATGAGTCA 1746847 Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAA 22850 || || | || || |||||||| | || | | || || | | | ||| || Sbjct 1746848 GTACATCGAGTTCGTCGCAGATCGGTTGTTGGGGGCGTTAGGGTACGGGAGGATTTACAA 1746907 Query 22851 CGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTT 22910 || | ||| || ||||| ||||||||||| ||||| | |||| || ||||||||||| Sbjct 1746908 TGTGGCTAACCCTTTTGATTGGATGGAACTGATTTCGTTGCAAGGCAAAACCAATTTCTT 1746967 Query 22911 CGAAAAAAGAGTTGGTGAATACCAAAAAGC 22940 ||| ||||||||||| || ||||| ||||| Sbjct 1746968 CGAGAAAAGAGTTGGAGAGTACCAGAAAGC 1746997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303252168949868