Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4 118 9e-22 seq5 95.1 1e-14 seq10 89.7 4e-13 seq13 86.0 5e-12 seq2 84.2 2e-11 >seq4 Length=12062019 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 ||||| ||||| | || || ||||| ||||| || ||| | || ||| |||| || ||| Sbjct 4154215 AACAAGATGCAGATCTTCGTGAAAACCTTAACCGGCAAAACCATCACCCTCGAGGTGGAG 4154274 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 | ||||||||||| | ||||| ||||| ||||| |||||||| ||||| Sbjct 4154275 AGCTCAGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCT 4154334 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 ||||||||| | |||| | || |||||||||||| ||||| | | ||| | | ||| Sbjct 4154335 GATCAACAGCGCTTGATCTTCGCCGGCAAGCAACTTGAAGACGGCCGAACCCTTGCGGAT 4154394 Query 24165 TATAACATTCAAAAAGAATCTAC 24187 || || || ||||| ||||| || Sbjct 4154395 TACAATATCCAAAAGGAATCGAC 4154417 >seq5 Length=11097736 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 23977 TTTAGCCAAA-CAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCAT 24034 || |||||| |||| ||||| | || || ||||| |||| || || | || ||| | Sbjct 4356790 TTCAGCCAACGCAAAGATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATAACCCT 4356849 Query 24035 CGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGG 24094 ||| ||||| || ||||||||||| | |||||| ||||| ||||| ||||| Sbjct 4356850 CGAGGTCGAATCCTCTGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGG 4356909 Query 24095 CATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAA 24154 || || || || || || | || || | || ||||||||| |||||||| | | | | Sbjct 4356910 AATCCCGCCGGACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCAC 4356969 Query 24155 CGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193 | | ||| || ||||| || || ||||| ||| |||| Sbjct 4356970 CTTAGCCGACTACAACATCCAGAAGGAATCCACACTTCA 4357008 >seq10 Length=8461613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || || || ||| | || ||| ||||||||||| | Sbjct 2239249 ATGCAAATCTTCGTCAAAACTTTGACCGGCAAAACCATCACCCTCGAAGTCGAGAGTTCC 2239190 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| || || ||||| |||||||| |||||||| ||| Sbjct 2239189 GACACGATTGACAACGTCAAGGCCAAAATCCAGGACAAGGAAGGCATCCCTCCCGACCAA 2239130 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | || || | || ||| || || || || || | | | || | || |||||||| Sbjct 2239129 CAGCGGCTCATCTTCGCCGGGAAACAGCTGGAGGACGGCCG-TACTTTGGCTGATTATAA 2239071 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| ||||| || || || Sbjct 2239070 CATCCAAAAGGAGTCAAC 2239053 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || || ||||||||| | || ||| | || || || Sbjct 2238794 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2238735 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || ||||| | ||||| ||||||| || || ||||| || || || ||||| Sbjct 2238734 GGATACAATCGATAACGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGATCA 2238675 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 || || || || | | ||| || ||| | || |||| || | | | ||| ||||||| Sbjct 2238674 GCAAAGGCTTATCTTTGCCGGGAAACAATTGGAGGATGGGAGGA-CTTTAGCTGATTATA 2238616 Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193 ||||||| ||||| ||||| |||| Sbjct 2238615 ACATTCAGAAAGAGTCTACCCTTCA 2238591 >seq13 Length=7441454 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || ||| | || ||||| || | Sbjct 4972478 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCTTGGAGGTCGAATCCTCC 4972537 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| || || || ||| Sbjct 4972538 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCGGACCAA 4972597 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || ||||||||| || ||||| | | | | | | ||| |||||| Sbjct 4972598 CAACGTCTCATATTCGCCGGCAAGCAGCTTGAAGACGGCCGGACCCTAGCCGACTATAAC 4972657 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 4972658 ATCCAGAAGGAGTCCAC 4972674 >seq2 Length=14367614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || ||||||||||| ||||| ||||| ||||| |||||| | || ||||| || ||| Sbjct 7189297 GATAAAGAAGGCATCCCTCCTGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAA 7189356 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | ||| | ||||||||||| ||||| || || ||| |||| | || || Sbjct 7189357 GATGGCCGAACTCTTGCTGATTATAACATCCAAAAGGAGTCCACACTTCACCTTGTTTTG 7189416 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || | || ||||| ||||| || Sbjct 7189417 AGGCTTAGGGGAGGAACTATGAT 7189439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429904173181470