Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq10 102 7e-17 seq9 96.9 3e-15 seq2 89.7 4e-13 >seq10 Length=8461613 Score = 102 bits (112), Expect = 7e-17 Identities = 145/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCC 115342 |||||| ||||||||||| || | || |||||||| || ||| | || ||| || | Sbjct 2238794 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACAATCACCTTGGAGGTGGAAAGTTC 2238735 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | ||| | || || || || ||| ||| ||||| ||||| ||||| || Sbjct 2238734 GGATACAATC---GATAACGTCAAGGCAAAGATTCAGGATAAGGAAGGAATCCCCCCAGA 2238678 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||||||||| ||||| | ||| || |||||||| || |||| | || | || ||||| Sbjct 2238677 TCAGCAAAGGCTTATCTTTGCCGGGAAACAATTGGAGGATGGGAGGACTTTAGCTGATTA 2238618 Query 115462 TAACATTCAAAAAGAGTCTAC 115482 ||||||||| ||||||||||| Sbjct 2238617 TAACATTCAGAAAGAGTCTAC 2238597 >seq9 Length=8984705 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||||||||| || ||||| ||||| || |||||| | ||| ||| Sbjct 7052852 ATGCAAATTTTTGTCAAGACCCTCACTGGAAAGACTATTACCTTGGAAGTTGAGAGTTCT 7052911 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| |||| |||||| || || || || ||||| |||| ||||| Sbjct 7052912 GATACCATTG-ACAATGTAAAAGCTAAGATCCAGGACAAGGAAGGTATCCCTCCAGATCA 7052970 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 || || || || | ||| |||||||| || || |||| | || | || ||||| || Sbjct 7052971 ACAGAGGCTGATATTTGCTGGCAAACAGTTGGAGGATGGGAGGACACTTGCAGATTACAA 7053030 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || ||||||||||| || | || ||||| || | |||| ||||||| Sbjct 7053031 TATCCAAAAAGAGTCAACCCTCCACTTGGTGCTGCGTCTGCGTGGAGGAA 7053080 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| |||| ||||||||| ||| | |||| |||||||||||| | ||| Sbjct 1646515 GATAAGGAAGGAATCCCTCCTGATCAGCAGAGATTGATTTTTGCGGGCAAACAGCTTGAA 1646456 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 || | ||| | || ||||||||||||||||| ||||| ||| | || |||| ||| Sbjct 1646455 GAAGGTCGAACTCTTGCAGATTATAACATTCAAAAGGAGTCGACTCTTCACTTGGTTTTG 1646396 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 1646395 AGGCTTAGGGGAGGAA 1646380 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || ||||| || || || |||||||| | || || | | Sbjct 7042240 ATGCAGATTTTTGTGAAGACGCTGACTGGTAAGACCATTACTTTGCAAGTTGAAAGCTCC 7042299 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||| |||| |||| || || |||||| || || ||||| ||| | || || Sbjct 7042300 AACACAGTTG-ACAATGTCAAGGCCAAAATTCAAGACAATGAAGGTATCCTCCA-GACCA 7042357 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || ||||||| ||| || || || | | |||| || ||| | || ||||| || Sbjct 7042358 GCAGAGGCTTATTTTTGCTGGTAAGCAGCTTAAGGATGGGAAGACCCTTGCAGATTACAA 7042417 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||||||| ||||| || | || |||||||| Sbjct 7042418 CATTCAAAAGGAGTCAACCCTCCACTTGGTGTTG 7042451 >seq2 Length=14367614 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || ||||| || ||||| || || | || ||| | Sbjct 9074505 ATGCAAATCTTTGTCAAGACTCTCACAGGTAAAACGATCACTTTGGAGGTAGAGAGCTCA 9074564 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| || || || ||| |||||||| || |||| || || Sbjct 9074565 GACACTATTG-ACAATGTCAAGGCCAAGATTCAGGATAAAGAGGGTATCCCACCAGACCA 9074623 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| || |||||| | ||||||| | || | || |||||||| Sbjct 9074624 GCAGAGGTTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTTGCTGATTATAA 9074683 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||||||||| ||||| || Sbjct 9074684 CATTCAAAAGGAGTCAAC 9074701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425312513112880