Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq13 131 2e-25 seq5 127 2e-24 seq4 123 2e-23 seq14 116 3e-21 seq10 116 3e-21 seq9 91.5 1e-13 seq2 89.7 5e-13 >seq13 Length=7441454 Score = 131 bits (144), Expect = 2e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | || || || | || | ||| |||||||| || ||||| || ||| Sbjct 4972705 GCCACCGCGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGC 4972646 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||| || ||||||||||| ||| | || | ||| || |||||||| || Sbjct 4972645 TAGGGTCCGGCCGTCTTCAAGCTGCTTGCCGGCGAATATGAGACGTTGTTGGTCCGGTGG 4972586 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||||| | || | || |||| ||| |||| Sbjct 4972585 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGATTCGAC 4972526 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| ||||| ||||| ||||| ||||| ||||||||| || Sbjct 4972525 CTCCAAGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATGGCT 4972474 >seq5 Length=11097736 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||| || || | || | || || ||||| || |||||||| ||| Sbjct 4357033 GCCACCCCTGAGACGGAGAACGAGGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGC 4356974 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||| || ||||||||||| ||| |||| | ||| ||||||||||| || Sbjct 4356973 TAAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCCGGCGG 4356914 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| ||| || |||| | || | || || | ||| |||| Sbjct 4356913 GATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGGATTCGAC 4356854 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || ||||| ||||| ||||| |||||||| Sbjct 4356853 CTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCAT 4356806 >seq4 Length=12062019 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| | ||||| | || | ||| || ||||| || || ||||| ||| Sbjct 4154676 GCCTCCGCGCAGCCTGAGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCGGC 4154617 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| || ||||| ||||||||||| Sbjct 4154616 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGAGG 4154557 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | || | || || | | |||| Sbjct 4154556 GATGCCCTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTCGAC 4154497 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || |||||||| ||||| ||||| |||||||| Sbjct 4154496 TTCAAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 4154449 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 |||||| | || | || |||||||| || || |||||||| | ||| | ||| Sbjct 4154889 CAGCACAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTGCCGTC 4154830 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| | |||||| || ||| | || || | |||||| ||||||||||| ||||| || || Sbjct 4154829 CTCCAACTGCTTCCCGGCGAATATCAACCTCTGCTGATCCGGAGGGATCCCTTCCTTATC 4154770 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 |||||| ||||| | || | ||||| | ||| | || | |||| || Sbjct 4154769 CTGGATTTTTGCCTTGACGTTATCAATTGTATCCGAACTCTCTACCTCCAGAGTAATAGT 4154710 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| ||||| | ||||| ||||||||||||||| || Sbjct 4154709 TTTCCCGGTCAAGGTTTTGACGAAAATCTGCATGCCT 4154673 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || || || | || | ||| |||||||| || ||||||||||| Sbjct 4155131 CCACCGCGAAGGCGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGCA 4155072 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| | |||||| || ||| |||| | | |||||| || || || Sbjct 4155071 AGAGTGCGCCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGA 4155012 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||| ||| ||| || | | || | ||||| | ||| | Sbjct 4155011 ATCCCCTCCTTATC-TTGAATTTTTGCTTTCACATTATCGATTGTATCAGAACTCTCCAC 4154953 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || ||||| || || || ||||| |||||||| Sbjct 4154952 CTCAAGCGTAATCGTCTTTCCGGTCAGCGTCTTCACGAAGATCTGCAT 4154905 >seq14 Length=6982396 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT-CGCT 131066 ||||| || ||||| || || | || | ||| ||||||||||| |||||||||| |||| Sbjct 1120474 CCACCACGTAAACGGAGGACGAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCCGCT 1120533 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | |||||| |||||||| || || |||| | | ||||||||||| || Sbjct 1120534 -AAGGTTCTGCCGTCCTCGAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGTGG 1120592 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| ||| || ||| | | || | || |||| | |||| Sbjct 1120593 GATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCGAC 1120652 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||||||| || || || || ||||| || ||||| Sbjct 1120653 TTCCAGGGTTATGGTTTTACCCGTCAGGGTCTTGACGAAGATTTGCAT 1120700 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||||||||||| || |||||||||||| | Sbjct 1120702 CCACCACGTAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGCC 1120761 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | || | ||||| |||||||| || || |||| | | ||||||||||| || Sbjct 1120762 AGGGTTCTGCCA-TCCTCGAGCTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGTGG 1120820 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||| | | || | || || | ||||| Sbjct 1120821 GATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCAGAACTCTCGAC 1120880 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || || || ||||| |||||||| Sbjct 1120881 TTCCAGCGTGATTGTCTTGCCGGTGAGTGTCTTAACGAAGATCTGCAT 1120928 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| | || | || | ||| ||||||||||| ||||||||||| | Sbjct 1120246 CCACCACGGAGACGTAAGACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCCGCC 1120305 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| || ||||| || || |||| | | ||||||||||| || Sbjct 1120306 AAAGTTCGGCCGTCCTCGAGTTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGGGGA 1120365 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||| || ||| | | || | || |||| | || | Sbjct 1120366 ATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCAACT 1120425 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || || || || || || || || ||||| Sbjct 1120426 TCCAAGGTTATGGTTTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 1120472 >seq10 Length=8461613 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||||||||| ||||| ||||| || || || |||||| ||||| || || Sbjct 2239053 GTTGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCG 2239112 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | ||||| ||||| |||||||| ||||| ||||| |||||| |||| Sbjct 2239113 GCGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTG 2239172 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| ||||| |||| ||| | |||||| ||||| | |||| Sbjct 2239173 ACGTTGTCAATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTT 2239232 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| || ||||| Sbjct 2239233 TTGACGAAGATTTGCAT 2239249 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 131031 ATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTG 131090 ||| | ||| || |||||||| ||||||||||| || ||| | | |||||| ||||| Sbjct 2238818 ATGAAGGGTTGATTCCTTTTGTATGTTGTAATCAGCCAAGGTCCTCCCGTCCTCAAGCTG 2238877 Query 131091 CTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTT 131150 ||| || ||| |||| ||||| || ||||| || ||||| ||||| || || ||| || Sbjct 2238878 CTTCCCGGCGAAGATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTATCTTGGATCTT 2238937 Query 131151 CTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 ||| | | || | || || | | ||||| || | ||| | || || || || Sbjct 2238938 GGCCTTAACGTTATCAATCGTGTCCGAGCTCTCGACCTCCAAGGTTATTGTCTTTCCTGT 2238997 Query 131211 TAGAGTTTTTACGAAAATCTGCATG 131235 | ||||| || || || |||||| Sbjct 2238998 CAAGGTTTTGACAAAGATTTGCATG 2239022 >seq9 Length=8984705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| ||| || || | ||| ||||||||||||||||||||||| Sbjct 7042465 CCACCACGAAGGCGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCTGCA 7042406 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | |||| |||||||| || || | || | | ||||||||| ||| || Sbjct 7042405 AGGGTCTTCCCATCCTTAAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGGTCTGGA-GG 7042347 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||| ||||| | || || || | || | || | Sbjct 7042346 ATACCTTCATTGTCTTGAATTTTGGCCTTGACATTGTCAACTGTGTTGGAGCTTTCAACT 7042287 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | | |||| ||| ||||| || || || || || ||||||||||| Sbjct 7042286 TGCAAAGTAATGGTCTTACCAGTCAGCGTCTTCACAAAAATCTGCAT 7042240 >seq2 Length=14367614 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | || ||||| || || | ||| |||||||| || ||||| || || ||| Sbjct 9074047 CCACCACGGAGCCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCT 9073988 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || || || ||||| ||||| || | || | | |||||||| ||||| Sbjct 9073987 -AGGGTTCGGCCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCGGGAGG 9073929 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| ||| || ||||| | || | ||| || | | ||| | Sbjct 9073928 GATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAAC 9073869 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || ||||| || || || ||||| Sbjct 9073868 CTCAAGGGTGATGGTCTTGCCTGTAAGGGTTTTCACAAAGATTTGCAT 9073821 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| || | ||| ||||| ||||| | ||| |||||||| || ||||| || || ||| Sbjct 9074275 CCACCACGGAGACGAAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCT 9074216 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || || || ||||| ||||| || | || | | || ||||| ||||| Sbjct 9074215 -AGGGTTCGGCCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGTTGGTCAGGAGG 9074157 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| ||||| ||| || ||||| | || | ||| || | | ||| | Sbjct 9074156 GATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTATCAATAGTGTCAGAGCTCTCAAC 9074097 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || ||||| || || || || ||||| Sbjct 9074096 CTCCAAGGTGATAGTCTTTCCTGTGAGAGTCTTGACAAAGATTTGCAT 9074049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471976962428160