Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq10 107 2e-18 seq1649 105 5e-18 seq14 105 5e-18 seq4 102 7e-17 seq9 98.7 8e-16 seq2 96.9 3e-15 seq13 84.2 2e-11 >seq10 Length=8461613 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | || || || ||||||||||| ||||| || || ||| Sbjct 2239023 CCCCCACGAAGCCTGAGGACAAGGTGGAGAGTTGACTCCTTTTGGATGTTATAATCAGCC 2239082 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||||| ||||| || || | || |||||||||||||| ||| Sbjct 2239083 AAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGAGGG 2239142 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || ||||| |||| ||| || | | | | |||||| ||| | Sbjct 2239143 ATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCAATCGTGTCGGAACTCTCGACT 2239202 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| ||||||| |||||||| || || ||||| Sbjct 2239203 TCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGACGAAGATTTGCAT 2239249 >seq1649 Length=3542 Score = 105 bits (116), Expect = 5e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | |||||| ||||||||||| || || |||||||| |||| || | ||| Sbjct 1023 AGGACAAGATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCC 964 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || ||||| ||| | || | || ||| ||||| ||| | ||||| ||||| Sbjct 963 TCCAACTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCC 904 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||||| ||||| | | | | ||||| | ||| |||| |||||||| Sbjct 903 TGAATCTTTGCT--TTCACATTGTCAATCGTGTCTGAGCTCTCAACCTCCAGGGTGATGG 846 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||| || |||||||| |||||||| Sbjct 845 TTTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 812 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||||| || | || |||| |||||| || ||||||||||| ||||| ||||| || Sbjct 811 CCCTCCTCTAAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTGC 752 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || || | || || || ||| |||| | || |||||||| || Sbjct 751 AAGTGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCAGGTGG 692 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||||| || || || || ||| || || | | | | ||||| | |||| Sbjct 691 GATACCCTCCTTATCTTGGATCTTGGCT--TTGACGTTGTCAATTGTGTCAGAGCTCTCC 634 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| || |||||||| || |||| || || ||||||||||||||| Sbjct 633 ACCTCCAAAGTAATGGTTTTACCAGTCAAGGTCTTCACAAAAATCTGCATT 583 >seq14 Length=6982396 Score = 105 bits (116), Expect = 5e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| || || || ||||||||||| |||||||| || |||| ||| | ||||||| Sbjct 1120264 ACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCCGCCAAAGTTCGGCCGTCCTCG 1120323 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GG 16844 | ||| || || ||| | ||||||| || |||||| || | || |||||||| || Sbjct 1120324 AGTTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGGGGAATTCCTTCTTTGTCCTGG 1120383 Query 16845 CAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTT 16904 || || |||||| | | | | |||||| | || ||||| ||| ||||||| Sbjct 1120384 ATCTTGGC--CTTCACGTTGTCGATGGTGTCGGAGCTTTCAACTTCCAAGGTTATGGTTT 1120441 Query 16905 TTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || |||||||| || ||||| Sbjct 1120442 TGCCCGTCAGGGTCTTGACAAAGATTTGCAT 1120472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| |||||||| || || | |||| || ||||||| | || Sbjct 1120498 TGGAGGGTTGACTCCTTTTGGATGTTGTAATCCGCTAAGGTTCTGCCGTCCTCGAGCTGC 1120557 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | ||||||| || |||||| || | || || ||||| || || Sbjct 1120558 TTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTG 1120617 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | |||||| | || ||||| ||| |||||||| || | Sbjct 1120618 GC--CTTCACGTTGTCAATGGTGTCGGAGCTTTCGACTTCCAGGGTTATGGTTTTACCCG 1120675 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| || || ||||| Sbjct 1120676 TCAGGGTCTTGACGAAGATTTGCAT 1120700 >seq4 Length=12062019 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || ||||| || || | || || || || ||||| || || |||||||||||| Sbjct 4154675 CCTCCGCGCAGCCTGAGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCGGCC 4154616 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || ||||| || | || | |||||||||||| ||| Sbjct 4154615 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGAGGG 4154556 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | | ||||| | || Sbjct 4154555 ATGCCCTCCTTGTCTTGGATCTTGGC--CTTAACGTTGTCGATCGTGTCAGAGCTTTCGA 4154498 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||| || ||||| || |||||||| || |||||||| Sbjct 4154497 CTTCAAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 4154449 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| || || || || |||||||| || ||||| || || | |||| | |||| Sbjct 4154432 AGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCAAGGGTTCGGCCGTCT 4154373 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| ||||| || | || | |||||||| || ||| | ||| || ||||| Sbjct 4154372 TCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCT 4154313 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||||| | |||| || | |||||||| Sbjct 4154312 TGGATCTTGGC--CTTGACGTTGTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGG 4154255 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 |||| ||||| | ||||| || || |||||||| |||| Sbjct 4154254 TTTTGCCGGTTAAGGTTTTCACGAAGATCTGCATCTTGT 4154216 >seq9 Length=8984705 Score = 98.7 bits (108), Expect = 8e-16 Identities = 154/215 (72%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||| ||||||||||| || || |||||||| |||| || | ||| Sbjct 7046624 AGGACCAGATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCC 7046565 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || ||||| ||| | || | || ||| ||||| ||| | ||||| ||||| Sbjct 7046564 TCCAA-TGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCC 7046506 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC-TCCGTTTCCACGGTGATG 16900 || |||||| ||||| | | | | |||| | | || || |||| ||||||| Sbjct 7046505 TGAATCTTTGCT--TTCACATTGTCAATCGTGT--CTGAGCTTCAACCTCCAGGGTGATG 7046450 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || |||| || |||| ||| |||||||| Sbjct 7046449 GTTTTCCCAGTCAAGGTCTTGAAAAATATCTGCAT 7046415 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | |||||| ||||||||||| || || |||||||| |||| || | ||| Sbjct 7053515 AGGACAAGATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCC 7053456 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || ||||| ||| | || | || ||| ||||| ||| | ||||| ||||| Sbjct 7053455 TCCAACTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGG-AATCCCTCCTTGTCC 7053397 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||||| ||||| | | | | ||||| | ||| |||| |||||||| Sbjct 7053396 TGAATCTTTGCT--TTCACATTGTCAATCGTGTCTGAGCTCTCAACCTCCAGGGTGATGG 7053339 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| ||| || |||||||| |||||||| Sbjct 7053338 -TTTTCCCATCAAGGTCTTGACAAATATCTGCAT 7053306 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| || || || ||||||||||| |||||||| || || Sbjct 7042466 CCCACCACGAAGGCGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCTGC 7042407 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| || | |||| | || || || ||| ||||||||| ||| ||||| ||| Sbjct 7042406 AAGGGTCTTCCCATCCTTAAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGGTCTGGAGG 7042347 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | || || ||||| ||||| ||| || | | | || |||| | | || Sbjct 7042346 -ATACCTTCATTGTCTTGAATTTTGGCCTTGACATTGTCAACTGTGTTGGAGCTTTCAAC 7042288 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || || |||||||| || |||||||||||||| Sbjct 7042287 TTGCAAAGTAATGGTCTTACCAGTCAGCGTCTTCACAAAAATCTGCAT 7042240 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || |||| ||| || || |||||||| || ||||| ||||| || Sbjct 7052850 CCACCACGGAGCCGCAAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTGCA 7052791 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| || | || || | ||||| || ||| |||| | || ||| ||||| || Sbjct 7052790 AGGGTTCTGCCATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCTGGTGGG 7052731 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | | |||||| | | | || || |||| Sbjct 7052730 ATACCCTCCTTGTCCTGAATCTTCGCCTTCACATTATCGATGGTATCTGAACTCTCCACC 7052671 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||||| || || || ||||| ||||| |||||||| Sbjct 7052670 TCTAAAGTGATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 7052624 >seq2 Length=14367614 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || ||||| ||||| || | |||| | | || Sbjct 9074260 AGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCTAGGGTTCGGCCATCT 9074201 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | |||||||| ||| ||||||||| |||||||| ||| | || || ||||| Sbjct 9074200 TCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGTTGGTCAGGAGGGATTCCTTCCTTGTCT 9074141 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | |||||| | ||| |||| |||||| | Sbjct 9074140 TGGATCTTAGC--CTTGACATTATCAATAGTGTCAGAGCTCTCAACCTCCAAGGTGATAG 9074083 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || || || |||||||| || ||||| Sbjct 9074082 TCTTTCCTGTGAGAGTCTTGACAAAGATTTGCAT 9074049 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || |||| || || ||||||||||| || ||||| ||||| || Sbjct 9074047 CCACCACGGAGCCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGCT 9073988 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | || || | |||||||| ||| ||||||||| || ||||| ||| Sbjct 9073987 AGGGTTCGGCCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCGGGAGGG 9073928 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || || ||| || | | | | |||||| | ||| Sbjct 9073927 ATTCCTTCCTTGTCTTGGATCTTAGC--CTTGACATTGTCAATAGTGTCAGAGCTCTCAA 9073870 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || ||||| ||||| || ||||| Sbjct 9073869 CCTCAAGGGTGATGGTCTTGCCTGTAAGGGTTTTCACAAAGATTTGCAT 9073821 >seq13 Length=7441454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||| |||||||| | ||| | |||| Sbjct 4972689 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCTAGGGTCCGGCCGTCT 4972630 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || ||||| || | || || || ||||||||| || | ||| || ||||| Sbjct 4972629 TCAAGCTGCTTGCCGGCGAATATGAGACGTTGTTGGTCCGGTGGGATGCCTTCCTTGTCT 4972570 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| || || |||| ||| |||| Sbjct 4972569 TGGATCTTGGC--CTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATGG 4972512 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || ||||| || || |||||||| Sbjct 4972511 TCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 4972478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405058012601260