Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq14 118 7e-22 seq4 105 4e-18 seq9 102 5e-17 seq2 95.1 8e-15 seq10 87.8 1e-12 seq1649 86.0 4e-12 >seq14 Length=6982396 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||||| |||| ||||| ||| |||||| |||||||||||||||| Sbjct 1119789 ACCACCACGAAGGCGCAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGC 1119848 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| | | | || || ||||| || || ||||| || | | ||| ||||| | || Sbjct 1119849 CAAAGTCCTTCCATCTTCCAATTGCTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGG 1119908 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| |||||| ||| ||| ||| ||||| | | ||||| || || || Sbjct 1119909 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATCGTATCCGAGCTCTCCAC 1119968 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| ||||| || |||| || || ||||| |||||||| Sbjct 1119969 CTCCAAAGTAATGGTTTTCCCTGTCAGAGTCTTGACGAAAATCTGCAT 1120016 Score = 114 bits (126), Expect = 9e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| ||||||||||| || ||| || ||||| || ||||||| |||| || |||| Sbjct 1120032 CAAAACCAAATGAAGGGTCGACTCTTTCTGAATGTTATAATCAGCCAAAGTTCGACCGTC 1120091 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || || | ||| ||||| | || | ||||| ||||| Sbjct 1120092 CTCGAGCTGCTTCCCTGCAAAGATAAGCCTTTGCTGATCTGGCGGAATTCCTTCCTTGTC 1120151 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || |||||| || | || || || |||||||||||| || || || || Sbjct 1120152 CTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAACTTTCAACTTCCAAGGTTATGGT 1120211 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||||||| ||| || || || || ||||| Sbjct 1120212 TTTACCCGTCAGGGTCTTGACAAAGATTTGCAT 1120244 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| || |||| || || || ||||||||| || |||||||| | | Sbjct 1120246 CCACCACGGAGACGTAAGACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCCGCC 1120305 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| || |||| || | ||| || || ||||| || || | ||| || || | ||| Sbjct 1120306 AAAGTTCGGCCGTCCTCGAGTTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGGGGA 1120365 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| || || |||||| || | || || || ||||||||| Sbjct 1120366 ATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCAACT 1120425 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || ||||| ||||||| ||| || || || || ||||| Sbjct 1120426 TCCAAGGTTATGGTTTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 1120472 >seq4 Length=12062019 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC-GTCGTCTAATTG 38173 ||||||||| |||||| || ||||||||||| | ||| | | | ||| || || || Sbjct 4154879 TGAAGAGTGGACTCCTTCTGGATATTGTAATCCG-CAAGGGTCCTGCCGTCCTCCAACTG 4154821 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 || ||||| ||||| | | || ||||| | |||| ||||| || ||| ||||| Sbjct 4154820 CTTCCCGGCGAATATCAACCTCTGCTGATCCGGAGGGATCCCTTCCTTATCCTGGATTTT 4154761 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 | ||| || || | | ||||| ||| || || || | ||||||||||| || || Sbjct 4154760 TGCCTTGACGTTATCAATTGTATCCGAACTCTCTACCTCCAGAGTAATAGTTTTCCCGGT 4154701 Query 38294 CAAGGTTTTCACGAATATCTGCATG 38318 ||||||||| ||||| ||||||||| Sbjct 4154700 CAAGGTTTTGACGAAAATCTGCATG 4154676 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| || ||||| |||||||| ||||||||||| | | || |||| || Sbjct 4154429 ACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCCGCAAGGGTTCGGCCGTCTTCA 4154370 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||| || ||||| || || | ||| |||||||| | || | |||||| ||||| Sbjct 4154369 AGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGG 4154310 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || || | || || ||| || || || || | || || ||||| Sbjct 4154309 ATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTTTTG 4154250 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || |||||||||||||| |||||||| || Sbjct 4154249 CCGGTTAAGGTTTTCACGAAGATCTGCATCTT 4154218 >seq9 Length=8984705 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| |||||||| || || |||||| ||||| || || || | ||| |||| Sbjct 7052838 CGCAAAACCAAATGGAGGGTTGACTCCTTCTGAATGTTATAGTCTG-CAAGG---GTTCT 7052783 Query 38163 ----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTC 38218 || || | |||||||||||||| |||| | || || || | |||| || || Sbjct 7052782 GCCATCTTCAAGCTGTTTTCCGGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTC 7052723 Query 38219 TTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGT 38278 |||||| ||| || ||||||||| | || |||||| ||| || || ||||| || Sbjct 7052722 CTTGTCCTGAATCTTCGCCTTCACATTATCGATGGTATCTGAACTCTCCACCTCTAAAGT 7052663 Query 38279 AATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || ||||| || || | |||||||| |||||||||||| Sbjct 7052662 GATGGTTTTCCCAGTGAGAGTTTTCACAAATATCTGCATG 7052623 Score = 100 bits (110), Expect = 2e-16 Identities = 165/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || | || ||||| |||||| || || || ||| ||||| |||||||||| Sbjct 7053082 CATT-CCTCCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTGTAAT 7053024 Query 38146 CAGACAAAACACGT-TCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 | | ||| | | | || || || ||||| || |||||||| || | |||||||| Sbjct 7053023 CTG-CAAGTGTCCTCCCATCCTCCAACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCT 7052965 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | |||| ||||| |||||| || || || ||||| | | ||||| ||| Sbjct 7052964 GGAGGGATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTC 7052905 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||| || |||||||| || || || | ||| || || || || |||||| Sbjct 7052904 TCAACTTCCAAGGTAATAGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCATG 7052851 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGT-TC 38161 ||||||||||| || || || |||||||||||| |||||||| | ||| | | | Sbjct 7042453 CGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCTG-CAAGGGTCTTCCC 7042395 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || | | || || || ||||| || || | || || || | | ||| ||||| || Sbjct 7042394 ATCCTTAAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGGTCTG-GAGGATACCTTCATT 7042336 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| |||||| ||| ||||| | || || | |||||||||| || ||||| Sbjct 7042335 GTCTTGAATTTTGGCCTTGACATTGTCAACTGTGTTGGAGCTTTCAACTTGCAAAGTAAT 7042276 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| |||| || ||||| || |||||||| Sbjct 7042275 GGTCTTACCAGTCAGCGTCTTCACAAAAATCTGCAT 7042240 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/221 (69%), Gaps = 9/221 (4%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| |||||||| || || |||||| || || || || || | ||| |||| Sbjct 7045948 CGCAAAACCAAATGGAGGGTTGACTCCTTCTGGATGTTATAGTCTG-CAAGG---GTTCT 7045893 Query 38163 ----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTC 38218 || || | |||||||| ||||| |||| | || || || | |||| || || Sbjct 7045892 GCCATCTTCAAGCTGTTTTCCAGCAAAAATTAACCTCTGCTGGTCTGGTGGGATACCCTC 7045833 Query 38219 TTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGT 38278 |||||| ||| ||| ||||||||| | || ||||| ||| || || || || || Sbjct 7045832 CTTGTCCTGAATCTTTGCCTTCACATTGTCGATGGTATCCGAACTCTCCACCTCCAAAGT 7045773 Query 38279 A-ATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || ||||| || || | |||||||| |||||||||||| Sbjct 7045772 GGATGGTTTTCCCGGTGAGAGTTTTCACAAATATCTGCATG 7045732 Score = 82.4 bits (90), Expect = 5e-11 Identities = 127/179 (71%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 38110 CCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG-TCGTCT 38168 ||||||| || || ||| ||||| ||||||||||| | ||| | | | || || Sbjct 7046169 CCAAATGGAGGGTTGACTCTTTTTGGATATTGTAATCTG-CAAGTGTCCTCCCATCCTCC 7046111 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 || ||||| ||||||||||| || | |||||||| | |||| ||||| |||||| Sbjct 7046110 AACTGTTTGCCGGCAAATATCAGCCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGG 7046051 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || || ||||| | | ||||| ||| |||||||| || |||||||| || Sbjct 7046050 ATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCAACTTCCAAGGTAATAGTCTT 7045992 >seq2 Length=14367614 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | |||||||||||||| ||||| || |||||||| ||||| || |||| Sbjct 9074959 CCACCACGTAAACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATATTATAGTCAGCG 9074900 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | | || || | || || || ||||| || || | ||| || || | ||| Sbjct 9074899 AGAGTTCTCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 9074840 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || || || || ||| ||||||||| | | |||||| ||| ||||| Sbjct 9074839 ATACCCTCCTTATCTTGGATCTTTGCCTTCACATTATCAATGGTATCTGAACTCTCAACC 9074780 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| ||||| || ||||| | || ||||| || || ||||| Sbjct 9074779 TCCAATGTGATAGTCTTTCCCGTAAGAGTCTTCACAAAAATTTGCAT 9074733 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||| ||||| || |||||||||||| || ||||||| | Sbjct 9074731 CCACCACGAAGACGGAGAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCAG-C 9074673 Query 38151 AAAACACGTT-CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | || | || || | ||||||||| ||||| || | | || || || | || Sbjct 9074672 AAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGG 9074613 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || ||||| ||| ||| || ||| ||||| | | ||| ||| || || || Sbjct 9074612 GATACCCTCTTTATCCTGAATCTTGGCCTTGACATTGTCAATAGTGTCTGAGCTCTCTAC 9074553 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || |||||||| || | || || || || || |||||| Sbjct 9074552 CTCCAAAGTGATCGTTTTACCTGTGAGAGTCTTGACAAAGATTTGCATG 9074504 >seq10 Length=8461613 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| || ||||| |||||| || || || ||||| | ||| ||| |||| || Sbjct 2239269 ACCAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCCGCCAAGGTACGACCGTCTTCG 2239328 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||| ||||| || || || | ||| || |||| |||| ||||| ||||| Sbjct 2239329 AGCTGTTTCCCGGCGAAGATGAGCCTTTGCTGGTCGGGTGGGATCCCTTCCTTGTCTTGG 2239388 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || || | || || || ||| || || || | || || || || Sbjct 2239389 ATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTTATGGTCTTG 2239448 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAA 38326 || |||| |||||||||||| |||||||| || || || Sbjct 2239449 CCGGTCAGGGTTTTCACGAAGATCTGCATCTTCTAAAA 2239486 >seq1649 Length=3542 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || | || ||||| |||||| || || || ||| ||||| |||||||||| Sbjct 586 CATT-CCTCCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTGTAAT 528 Query 38146 CAGACAAAACACGT-TCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 | | ||| | | | || || || ||||| || |||||||| || | |||||||| Sbjct 527 CTG-CAAGTGTCCTCCCATCCTCCAACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCT 469 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | |||| ||||| |||||| || || || ||||| | | ||||| ||| Sbjct 468 GGAGGGATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTC 409 Query 38265 TCAACTTCTAATGTAATAGTTTTACC 38290 |||||||| || |||||||| || || Sbjct 408 TCAACTTCCAAGGTAATAGTCTTTCC 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334922404905494