Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq26 219 5e-52 seq7 91.5 2e-13 seq9 89.7 6e-13 seq14 86.0 7e-12 seq1 86.0 7e-12 seq12 84.2 2e-11 seq8 82.4 9e-11 >seq26 Length=2022356 Score = 219 bits (242), Expect = 5e-52 Identities = 412/600 (69%), Gaps = 12/600 (2%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| ||||| || || ||| ||| | |||||| |||||||| || ||||| || Sbjct 1746713 GTACAGCAAGCAAGCGAAATCGCAATGGAGACCTTCATCTCGTGAGATTAACTCGTTTGA 1746654 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTAC 93200 ||| ||||| || || | | || || || || | ||||||||| | ||| ||||| | Sbjct 1746653 GAAAGTTAATCCAGGCATTAACCCGCGCTTTTTTAACCAAAATATCGC-GCAGAAACTTC 1746595 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 |||| || || || ||||||||| ||||| || | | |||||||| ||| || | | Sbjct 1746594 CAGAGAAGAAAATCCCTTCCACGCAAGCAAAAGCGATTAGCCGTTCGGCGAAAGTTTCCG 1746535 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 || | | ||||||||| || ||||| || ||||| || | ||| || | ||||| Sbjct 1746534 AA---CCGTCGATCCATTTCAATGCCCACTCAGCTTTCTTAGCCACACATGGCACTGTTT 1746478 Query 93321 CGATAGCGTTAAATAG---GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTA 93377 ||| |||| || || || | | |||| || || ||||| || || | | Sbjct 1746477 CGACGGCGTGGAAGAGCCGGTTCTTT---TCGTTGGAGTCCTTGATGTAAGTTTCAAGGA 1746421 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 ||| |||||| || || |||| ||| || || || |||||||| || ||||| | Sbjct 1746420 GGAGACTATACATCTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCATAGAACGCAC 1746361 Query 93438 TAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 ||| || | ||| || ||||| | || | | |||||||||| ||| |||| Sbjct 1746360 GAGCCTCGGAGATTTGGACTTCCTTCATGAACCGGACGGCGAGATTTTCGAGGACGATAC 1746301 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 ||||||| |||||||| || || | | || | || || || || | || ||| Sbjct 1746300 CATCGGAGGCTGCAAAGAAGGCGAGGACGTGAGTGATGAAGTGGCGTTCGCCGTCGGTAA 1746241 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 | | ||||| | | |||||| || ||||||||||||||| | |||||||| || | Sbjct 1746240 GAGTTTCCCAGTGGCGTAGATCCGACGAGAGATCGACTTCTTCGGCGGTCCAAAAGGAGG 1746181 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 |||| ||||| |||||||| ||||||| | | ||||| || || || ||| |||||| Sbjct 1746180 CTTCGGCTTTCTTGTACATTTCCCATACTTGCGGGTATTGGATCGGGAACATG-CAAAAC 1746122 >seq7 Length=10072460 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/97 (82%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCTC-GGGA 126320 || |||||| ||||||||| ||||||||||||||| | ||| |||||||| | || | || Sbjct 8267314 ACTGTCAGGATGGCCGAGTTGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTCAGAGA 8267373 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| ||| || ||||| |||||||||| | ||| Sbjct 8267374 GCGTGGATTCAAATCCCACTTCTGACAAATTTTCATT 8267410 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 7747199 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 7747256 Query 126328 TTCGAACCCCACACCTGACAAATTATTA 126355 ||| || |||||| ||| || ||| ||| Sbjct 7747257 TTCAAATCCCACAGCTGTCATATTTTTA 7747284 >seq9 Length=8984705 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/103 (81%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 4806832 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 4806773 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA-TTATTGGAATTT 126364 |||||||| || ||||| ||||||||||| || || ||||| Sbjct 4806772 GTGGGTTCAAATCCCACTTCTGACAAATTACTTTTTTTAATTT 4806730 >seq14 Length=6982396 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/100 (80%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 126259 ATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG 126318 ||| || | ||| |||||||||||||||||||||||||||||| | |||||| || Sbjct 1103894 ATTAACTGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAA 1103837 Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACA--AATTATTAT 126356 | |||||||||| || |||||| ||| || |||| |||| Sbjct 1103836 GGGCGTGGGTTCAAATCCCACAGCTGTCAATAATTTTTAT 1103797 >seq1 Length=15579451 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 5558079 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 5558136 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| |||||| Sbjct 5558137 TTCAAATCCCACAGCTGTCAAATT 5558160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 6661027 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 6661084 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 6661085 CGTGGGTTCAAATCCCACTTCTGACA 6661110 >seq12 Length=8065533 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 7631307 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 7631250 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| || ||| || Sbjct 7631249 GGGTTCAAATCCCACAGCTGTCATATTTTT 7631220 >seq8 Length=9139585 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | | Sbjct 6858055 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGGG 6858112 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 6858113 CGTGGGTTCAAATCCCACTTCTGACAA 6858139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556818520343760