Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq15 140 7e-28 seq7 93.3 9e-14 seq4 93.3 9e-14 seq13 91.5 3e-13 seq5 91.5 3e-13 seq1 91.5 3e-13 seq14 87.8 4e-12 >seq15 Length=6219335 Score = 140 bits (154), Expect = 7e-28 Identities = 206/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 ||| ||||| | |||||||| ||||| || || | |||| | | | || ||||| Sbjct 1652621 TGAATTCATTAATAAGGAGCTTATTCTGTTTTCCATGGCTGATCTTCAAAGGTCAATTCC 1652680 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 || | |||||||| ||||| || | |||||||| ||| | |||||| | Sbjct 1652681 TTCAATGATTGATGGCCTGAAGCCTGGTCAAAGGAAGATCCTTTTTTGTTCTTTCAAGAG 1652740 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 ||| | || | ||| ||||| ||||| ||||| |||||||| || || ||||| Sbjct 1652741 GAATTTTGTAAAGGAAGCAAAGGTTGCTCAATTTTCAGGTTATGTTTCAGAGCATTCTGC 1652800 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 |||||||| |||||||||||||| || | ||||| || |||||||| || | ||| Sbjct 1652801 TTACCATCATGGTGAGCAGAGTCTTGCTAGTACAATTGTTGGAATGGCACAAGATTTTGT 1652860 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 ||||||||||||||| ||| | || | || ||||| ||||| ||||| Sbjct 1652861 GGGCAGTAACAACATAAACCTTCTCCATCCAGGTGGTCAATTTGGCACTCGT 1652912 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1694731 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1694672 Query 142564 CCCAC 142568 ||||| Sbjct 1694671 CCCAC 1694667 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||| ||||||| || ||||||| || |||||||||||||||| Sbjct 451034 TAGCCCGTCTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 451093 Query 142562 GCCCCAC 142568 ||||||| Sbjct 451094 GCCCCAC 451100 >seq7 Length=10072460 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 5207084 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5207143 Query 142563 CCCCAC 142568 |||||| Sbjct 5207144 CCCCAC 5207149 >seq4 Length=12062019 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 6624343 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6624402 Query 142563 CCCCAC 142568 |||||| Sbjct 6624403 CCCCAC 6624408 >seq13 Length=7441454 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 3508945 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3509004 Query 142564 CCCAC 142568 ||||| Sbjct 3509005 CCCAC 3509009 >seq5 Length=11097736 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1627820 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1627761 Query 142564 CCCAC 142568 ||||| Sbjct 1627760 CCCAC 1627756 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1979003 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1979062 Query 142564 CCCAC 142568 ||||| Sbjct 1979063 CCCAC 1979067 >seq1 Length=15579451 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 2771588 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2771647 Query 142564 CCCAC 142568 ||||| Sbjct 2771648 CCCAC 2771652 >seq14 Length=6982396 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 6841441 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 6841500 Query 142563 CCCCAC 142568 |||||| Sbjct 6841501 CCCCAC 6841506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027756810528234