Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq2 102 6e-17 seq9 91.5 1e-13 seq1649 84.2 2e-11 seq14 82.4 5e-11 >seq2 Length=14367614 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| |||||| | || | |||| || || ||||||||||||||||| || || ||| Sbjct 9074826 GATAAGGAGGGTATCCCACCAGACCAGCAAAGGCTTATCTTTGCTGGCAAGCAGCTTGAA 9074885 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | |||| | || || || ||||| || ||||||||||| ||||| |||| || Sbjct 9074886 GATGGGAGAACTCTCGCTGACTATAATATCCAAAAGGAATCTACCCTTCACTTGGTGTTG 9074945 Query 22047 CGTTTACGAGGAGG 22060 |||||||| || || Sbjct 9074946 CGTTTACGTGGTGG 9074959 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || ||||| || || |||| || | || Sbjct 9074505 ATGCAAATCTTTGTCAAGACTCTCACAGGTAAAACGATCACTTTGGAGGTAGAGAGCTCA 9074564 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| |||||||||||| | || | |||| Sbjct 9074565 GACACTATTGACAATGTCAAGGCCAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 9074624 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | || |||||||| |||||||| |||||| || || | || ||||| || Sbjct 9074625 CAGAGGTTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGGACACTTGCTGATTATAAC 9074684 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||| || || ||||| |||| | ||| | || || || Sbjct 9074685 ATTCAAAAGGAGTCAACCCTTCACTTGGTTCTCCGTCTTCGTGGTGG 9074731 >seq9 Length=8984705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || || || || |||||||| ||| |||| ||||| || Sbjct 7046415 ATGCAGATATTTTTCAAGACCTTGACTGGGAAAACCATCACCCTGGAGGTTGAAGCT-CA 7046473 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | || ||| ||| || || ||||| | ||| | |||| Sbjct 7046474 GACACGATTGACAATGTGAAAGCAAAGATTCAGGACAAGGAGGGGATTCCTCCAGACCAG 7046533 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||||||||| | | | || ||| ||| |||| || |||||| Sbjct 7046534 CAGAGGTTGATCTTTGCTGGCAAGC-ATTGGAGGATGGTCGCACTCTGGCTGACTACAAT 7046592 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||| || || || ||| |||| Sbjct 7046593 ATCCAGAAGGAGTCCACCCTGCATCTGGT 7046621 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||||| || || || || || || ||||| ||| ||||| ||| || Sbjct 7042467 ATGCAAATTTTTATGAAGACCTTGACAGGAAAGACCATCACCCTGGAAGTTGAAAGTTCA 7042526 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| || || ||||| || || | || | |||| Sbjct 7042527 GACACCATTGATAATGTTAAGGCCAAGATCCAGGATAAGGAAGGGATCCCCCAAGACCAG 7042586 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| || || ||||| |||||| | || |||| || ||||| Sbjct 7042587 CAGAGGCTGATCTTTGCAGGGAAGCAACTTGAAGATGGGAGGACCCTGGCAGACTACAAC 7042646 Query 22014 ATTCAGAAGGAATCTACT 22031 |||||||||||||| ||| Sbjct 7042647 ATTCAGAAGGAATCAACT 7042664 >seq1649 Length=3542 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || || || || |||||||| ||| |||| || | || Sbjct 812 ATGCAGATATTTGTCAAGACCTTGACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTCA 871 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | || | || ||| ||| || || ||||| | ||| | |||| Sbjct 872 GACACGATTGACAATGTGAAAGCAAAGATTCAGGACAAGGAGGGGATTCCTCCAGACCAG 931 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||||||||| || | || ||| ||| |||| || |||||| Sbjct 932 CAGAGGTTGATCTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACTCTGGCTGACTACAAT 991 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 || |||||||| || || || ||| Sbjct 992 ATCCAGAAGGAGTCCACCCTGCAT 1015 >seq14 Length=6982396 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || | || || ||||||||||| |||| ||| | | Sbjct 1120016 ATGCAGATTTTCGTCAAGACTCTGACAGGGAAAACCATTACTTTGGAGGTGGAGAGCTCG 1119957 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || ||||| ||| ||| || || || || | || | | || Sbjct 1119956 GATACGATTGATAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCACCAGATCAG 1119897 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || |||||||| || ||| | |||||| || ||| |||| ||||||||| Sbjct 1119896 CAAAGGTTGATTTTTGCTGGGAAGCAATTGGAAGATGGAAGGACTTTGGCTGATTACAAT 1119837 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 ||||||||||| || || ||||| |||| || || Sbjct 1119836 ATTCAGAAGGAGTCCACCCTTCACCTGGTCTTGCG 1119802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358098289140196