Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq13 111 1e-19 seq10 109 5e-19 seq14 104 2e-17 seq4 100 2e-16 seq2 84.2 2e-11 seq9 82.4 6e-11 >seq13 Length=7441454 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 |||||||| || || || ||| | |||||||| ||||||||||| || |||||||| ||| Sbjct 4972632 TCTTCAAGCTGCTTGCCGGCGAATATGAGACGTTGTTGGTCCGGTGGGATGCCTTCCTTG 4972573 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | || | |||||||| ||||||||| |||| ||| | Sbjct 4972572 TCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATG 4972513 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || || || || || ||||| || || |||||||||||| Sbjct 4972512 GTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATGGCT 4972474 >seq10 Length=8461613 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || || | || | || | || || || ||||| ||||| ||||| Sbjct 2239020 ATGCCCCCACGAAGCCTGAGGACAAGGTGGAGAGTTGACTCCTTTTGGATGTTATAATCA 2239079 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| || || || ||||| || ||| ||||||| ||||||||||| ||| Sbjct 2239080 GCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGA 2239139 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| || || || | | |||| ||||||| ||| Sbjct 2239140 GGGATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCAATCGTGTCGGAACTCTCG 2239199 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||||||||||| |||||| || || || ||||| Sbjct 2239200 ACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGACGAAGATTTGCAT 2239249 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || |||||||| | ||| | || ||||| ||||| ||||||||||| Sbjct 2238792 ATTCCTCCACGAAGCCTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCA 2238851 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | || ||||| || || || ||| |||| | ||| |||||||| || Sbjct 2238852 GCCAAGGTCCTCCCGTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGTTGTTGGTCTGGT 2238911 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||||| || | | |||| ||||| | | ||| Sbjct 2238912 GGGATCCCTTCCTTATCTTGGATCTTGGCCTTAACGTTATCAATCGTGTCCGAGCTCTCG 2238971 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || || || |||| ||||| ||||| || |||||| Sbjct 2238972 ACCTCCAAGGTTATTGTCTTTCCTGTCAAGGTTTTGACAAAGATTTGCATG 2239022 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || || || || || ||||| ||||| Sbjct 2239248 ATACCGCCACGAAGACGGAGGACCAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCC 2239307 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| ||||| || ||||| || ||| ||||||| | || ||||| || Sbjct 2239308 GCCAAGGTACGACCGTCTTCGAGCTGTTTCCCGGCGAAGATGAGCCTTTGCTGGTCGGGT 2239367 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| || | | || | |||||||| ||| Sbjct 2239368 GGGATCCCTTCCTTGTCTTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAACTCTCG 2239427 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||||||||| ||||| || || |||||||| Sbjct 2239428 ACCTCGAGAGTTATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2239477 >seq14 Length=6982396 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | || | || || || ||||| ||||||||||| Sbjct 1120243 ATCCCACCACGGAGACGTAAGACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCC 1120302 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || || || ||||| || ||||| |||| || | || |||||||| Sbjct 1120303 GCCAAAGTTCGGCCGTCCTCGAGTTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGG 1120362 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| || | | || | |||||||| | ||| Sbjct 1120363 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCA 1120422 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| ||||| || || ||||| || ||||| Sbjct 1120423 ACTTCCAAGGTTATGGTTTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 1120472 >seq4 Length=12062019 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || | || | || ||||| ||||| || |||||||| Sbjct 4154450 ATACCGCCACGGAGACGGAGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCC 4154391 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||||| || || ||| |||| | |||||||| || ||| Sbjct 4154390 GCAAGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGA 4154331 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | || | |||||| | | || Sbjct 4154330 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCC 4154271 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||||||||| | ||||| || || |||||||| Sbjct 4154270 ACCTCGAGGGTGATGGTTTTGCCGGTTAAGGTTTTCACGAAGATCTGCAT 4154221 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || || ||||| ||| || || || || || || || || ||| Sbjct 4154645 GTTGATTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 4154586 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | ||||||||||||||||| ||||| || ||||| ||||| || Sbjct 4154585 GCGAAGATCAATCGCTGTTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTA 4154526 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | |||||| || | || | || |||||||| || ||| Sbjct 4154525 ACGTTGTCGATCGTGTCAGAGCTTTCGACTTCAAGAGTGATGGTCTTGCCGGTTAGGGTT 4154466 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 4154465 TTGACGAAGATCTGCAT 4154449 >seq2 Length=14367614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| || || | || || || ||||||||||| ||||| Sbjct 9074734 ATCCCACCACGAAGACGGAGAACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAATCA 9074675 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||||||||||||||| ||||| | || | | ||| ||||| || Sbjct 9074674 GCAAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGT 9074615 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || ||||| || |||||| || | | |||| ||||| | | || Sbjct 9074614 GGGATACCCTCTTTATCCTGAATCTTGGCCTTGACATTGTCAATAGTGTCTGAGCTCTCT 9074555 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | |||||| || || ||||| || ||||| || |||||| Sbjct 9074554 ACCTCCAAAGTGATCGTTTTACCTGTGAGAGTCTTGACAAAGATTTGCATG 9074504 >seq9 Length=8984705 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || || || | || || || ||||||||||||||||| Sbjct 7042468 ATCCCACCACGAAGGCGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCT 7042409 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| | ||| || |||||||| | || || | ||| ||||| ||| Sbjct 7042408 GCAAGGGTCTTCCCATCCTTAAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGGTCTGGA 7042349 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||| || || | | ||||| |||| || | ||| Sbjct 7042348 GG-ATACCTTCATTGTCTTGAATTTTGGCCTTGACATTGTCAACTGTGTTGGAGCTTTCA 7042290 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || || | || || || ||||| || || |||||||||||||| Sbjct 7042289 ACTTGCAAAGTAATGGTCTTACCAGTCAGCGTCTTCACAAAAATCTGCAT 7042240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420103298763288