Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq10 122 9e-23 seq13 102 9e-17 seq9 100 3e-16 seq1649 98.7 1e-15 seq14 98.7 1e-15 seq4 95.1 1e-14 seq2 91.5 2e-13 >seq10 Length=8461613 Score = 122 bits (134), Expect = 9e-23 Identities = 147/196 (75%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || || |||||||||| ||| || |||| || ||||| || || ||||| Sbjct 2239058 CTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAA 2239117 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||| ||||||| || | || ||||||||| |||||| |||| ||| Sbjct 2239118 GATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTGA-CGT 2239176 Query 42137 CGCCAC-CGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | || ||||||| ||| || || |||| |||||||||||||| || | || | Sbjct 2239177 TGTCAATCGTGTCGGAACTC---TCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTT 2239233 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||||||||| Sbjct 2239234 TGACGAAGATTTGCAT 2239249 >seq13 Length=7441454 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || || || || || || ||||| |||| || |||||||| || ||||| Sbjct 4972669 CTCCTTCTGGATGTTATAGTCGGCTAGGGTCCGGCCGTCTTCAAGCTGCTTGCCGGCGAA 4972610 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 |||||| || || ||||| | ||| | || |||||||| ||| || |||| ||| Sbjct 4972609 TATGAGACGTTGTTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGT 4972551 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||||| || || | || ||||| || |||||||| || || | Sbjct 4972550 TGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATGGTCTTACCCGTTAGGGTTTTCA 4972491 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 4972490 CGAAGATCTGCAT 4972478 >seq9 Length=8984705 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||||||||| || || || | || |||||||| |||||||| || Sbjct 7052587 CTCCTTCTGGATATTGTAATCAGCAAGGGTGCGGCCATCCTCTAGCTGTTTACCAGCAAA 7052528 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||| ||||| | || | | ||||||||| ||| || ||||| | Sbjct 7052527 GATAAGCCTCTGTTGGTCTGGCGGGATCCCCTCCTTGTCTTGGATCTTGGCTTTGACATT 7052468 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| ||| |||||| || | |||||||| ||||| || || || || Sbjct 7052467 ATCAATAGTGTCAGAGCT---TTCCACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTT 7052411 Query 42194 TACAAAGATTTGCAT 42208 |||||||| ||||| Sbjct 7052410 CACAAAGATCTGCAT 7052396 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/244 (70%), Gaps = 12/244 (5%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||||| |||||||||| || | |||||| || || || || || Sbjct 7046413 CCTCCTCTAAGGCGCAAAACCAAATGCAGGGT--TGATCTTTTGGATGTTATAGTCTGCA 7046356 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | | || || |||||||| |||||||| || | | ||| ||||| | ||| Sbjct 7046355 AGTGTCCTCCCATCTTCGAGCTGCTTTCCAGCGAAAATCAACCTCTGTTGGTCAGGTGGG 7046296 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACC-GTGTC---GCTCGATTC 42157 | | |||||| || ||| || ||||| ||| | || ||||| |||| || Sbjct 7046295 ATACCCTCCTTATCTTGGATCTTGGCTTTGA-CGTTGTCAATTGTGTCAGAGCTC---TC 7046240 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT--TTCACG 42215 ||| || | ||||||||||| || || | || || ||||| || |||||| | |||| Sbjct 7046239 CACCTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATTCCTCCACG 7046180 Query 42216 CCGA 42219 | || Sbjct 7046179 CAGA 7046176 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/208 (72%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||||| ||| |||||| || |||||||| ||||||||||| || | || || | ||| Sbjct 7053507 ATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTG 7053448 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| ||||| || || | | ||||||||| | || | | |||||||||| ||| | | Sbjct 7053447 CTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGG-AATCCCTCCTTGTCC-TGAATCT 7053390 Query 42125 TTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGC 42180 ||| ||| | | | | |||||| |||| || || || | ||||||||||| | Sbjct 7053389 TTGCTTTCACATTGTCAATCGTGTCTGAGCTC---TCAACCTCCAGGGTGATGGTTTT-C 7053334 Query 42181 CCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | | ||||| ||||| || ||||| Sbjct 7053333 CCATCAAGGTCTTGACAAATATCTGCAT 7053306 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||||| ||| |||||| || |||||||| ||||||||||| || | || || Sbjct 7046621 ACCAGATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCC 7046562 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||||| ||||| || || | | ||||||||| | || | | |||||||||| || Sbjct 7046561 A-ATGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCC-TG 7046504 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | |||| ||| | | | | |||||| | ||| || || | ||||||||||| Sbjct 7046503 AATCTTTGCTTTCACATTGTCAATCGTGTC-TGAGCTTCAACCTCCAGGGTGATGGTTTT 7046445 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| | ||| || ||||| Sbjct 7046444 CCCAGTCAAGGTCTTGAAAAATATCTGCAT 7046415 >seq1649 Length=3542 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||||| ||| |||||| || |||||||| ||||||||||| || | || || | ||| Sbjct 1015 ATGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGCCAGAGTGCGACCATCCTCCAACTG 956 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| ||||| || || | | ||||||||| | || | | |||||||||| ||| | | Sbjct 955 CTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCC-TGAATCT 897 Query 42125 TTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGC 42180 ||| ||| | | | | |||||| |||| || || || | ||||||||||| | Sbjct 896 TTGCTTTCACATTGTCAATCGTGTCTGAGCTC---TCAACCTCCAGGGTGATGGTTTTCC 840 Query 42181 CCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| ||||| || ||||| Sbjct 839 CAGTCAAGGTCTTGACAAATATCTGCAT 812 >seq14 Length=6982396 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || |||||||| |||| ||| || |||| || || ||||| ||||| || Sbjct 1120281 CTCCTTTTGGATGTTGTAATCCGCCAAAGTTCGGCCGTCCTCGAGTTGCTTCCCAGCAAA 1120340 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||||| | || | | || |||||| ||| || || | ||| Sbjct 1120341 GATAAGCCTTTGCTGGTCCGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTCA-CGT 1120399 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| || || | || |||||||||||||| || ||||| | Sbjct 1120400 TGTCGATGGTGTCGGAGCTTTCAACTTCCAAGGTTATGGTTTTGCCCGTCAGGGTCTTGA 1120459 Query 42196 CAAAGATTTGCAT 42208 ||||||||||||| Sbjct 1120460 CAAAGATTTGCAT 1120472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||| |||||||| | || ||| || ||||| || |||||||||| ||| || |||| Sbjct 1120032 CAAAACCAAATGAAGGGTCGACTCTTTCTGAATGTTATAATCAGCCAAAGTTCGACCGTC 1120091 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||||||| || || || || || | ||||| || | || | | |||||||| Sbjct 1120092 CTCGAGCTGCTTCCCTGCAAAGATAAGCCTTTGCTGATCTGGCGGAATTCCTTCCTTGTC 1120151 Query 42116 CATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 | ||| || || | ||| | | | |||||| ||| || || | || |||| Sbjct 1120152 CTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAACTTTCAACTTCCAAGGTTATGG 1120210 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || ||||| |||||||||||||| Sbjct 1120211 TTTTACCCGTCAGGGTCTTGACAAAGATTTGCAT 1120244 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || |||||||| || | || | |||| || |||||||| ||||| || Sbjct 1120509 CTCCTTTTGGATGTTGTAATCCGCTAAGGTTCTGCCGTCCTCGAGCTGCTTCCCAGCAAA 1120568 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||||| | ||| | | ||||||||| ||| || || | ||| Sbjct 1120569 GATAAGCCTTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 1120627 Query 42137 CGCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | || | ||||| ||| || || | || |||||||| ||||| || ||||| | Sbjct 1120628 TGTCAATGGTGTCGGAGCTTTCGACTTCCAGGGTTATGGTTTTACCCGTCAGGGTCTTGA 1120687 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 1120688 CGAAGATTTGCAT 1120700 Score = 82.4 bits (90), Expect = 8e-11 Identities = 152/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| |||| || | ||| |||||| ||||||||||||||||||| ||||| | Sbjct 1119802 CGCAAGACCAGGTGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAAAGTCCTTCCA 1119861 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || | ||||| ||||| || || | | ||||| || | ||| | | |||||| Sbjct 1119862 TCTTCCAATTGCTTCCCAGCAAAAATCAACCTTTGCTGATCTGGTGGAATCCCTTCCTTG 1119921 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| ||| | |||| || | | | | ||| || |||| ||||| || | || Sbjct 1119922 TCC-TGAATCTTTGCCTTAACATTATCAATCGTATCCGAGCTC---TCCACCTCCAAAGT 1119977 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||||| || || || ||||| || || || ||||| Sbjct 1119978 AATGGTTTTCCCTGTCAGAGTCTTGACGAAAATCTGCAT 1120016 >seq4 Length=12062019 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| ||||||||||| || || || || |||| || || ||||| || ||||| Sbjct 4154411 TCCTTTTGGATATTGTAATCCGCAAGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAG 4154352 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | ||||| || || | || | || |||||||| ||| || |||| ||| Sbjct 4154351 ATCAAGCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTT 4154293 Query 42138 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | ||||| |||| ||||| |||| |||||||||||||| |||| || || Sbjct 4154292 GTCGATGGTGTCTGAGCTC---TCCACCTCGAGGGTGATGGTTTTGCCGGTTAAGGTTTT 4154236 Query 42194 TACAAAGATTTGCATTTT 42211 || ||||| ||||| || Sbjct 4154235 CACGAAGATCTGCATCTT 4154218 >seq2 Length=14367614 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | ||||||||||||||| || | || |||||||| ||||| || ||||| Sbjct 9074959 CCACCACGTAAACGCAACACCAAGTGAAGGGTAGATTCCTTTTGGATATTATAGTCAGCG 9074900 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| | | | || || |||||||| ||||| || || || | |||||||| | ||| Sbjct 9074899 AGAGTTCTCCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 9074840 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | |||||| || ||| ||| || | | | | || || ||| || Sbjct 9074839 ATACCCTCCTTATCTTGGATCTTTGCCTTCACATTATCAATGGTATCTGAACTC---TCA 9074783 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| || || ||||| || ||||| ||||| |||||||| Sbjct 9074782 ACCTCCAATGTGATAGTCTTTCCCGTAAGAGTCTTCACAAAAATTTGCAT 9074733 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| || |||||||| || |||| | || || || || || ||||| || Sbjct 9074696 CTCCTTTTGAATGTTATAATCAGCAAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAA 9074637 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | | ||||||||| | ||| | | ||| || ||| ||| | || | |||| Sbjct 9074636 AATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTATCC-TGAATCTTGGCCTTGACAT 9074578 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || || | ||||| ||||| || || || |||| Sbjct 9074577 TGTCAATAGTGTCTGAGCTC---TCTACCTCCAAAGTGATCGTTTTACCTGTGAGAGTCT 9074521 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||||||||| Sbjct 9074520 TGACAAAGATTTGCAT 9074505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543171556568160