Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq10 105 7e-18 seq14 95.1 1e-14 seq5 93.3 4e-14 seq13 91.5 1e-13 seq1649 86.0 6e-12 seq9 86.0 6e-12 >seq10 Length=8461613 Score = 105 bits (116), Expect = 7e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||| ||||| || || || |||||| |||||| || ||||| |||| Sbjct 2239054 TTGACTCCTTTTGGATGTTATAATCAGCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGG 2239113 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| || ||||||||||| ||||| || ||||| ||||| |||||| || | Sbjct 2239114 CGAAGATGAGCCGCTGTTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTGA 2239173 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||||| ||| || |||| || | ||||| || |||| ||||| Sbjct 2239174 CGTTGTCAATCGTGTCGGAACTCTCGACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTT 2239233 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 2239234 TGACGAAGATTTGCAT 2239249 >seq14 Length=6982396 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || || | || | | ||||||||||||| |||||||| || | Sbjct 1120246 CCACCACGGAGACGTAAGACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCCGCC 1120305 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||||||| || || | | |||| || | || |||||||| || Sbjct 1120306 AAAGTTCGGCCGTCCTCGAGTTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGGGGA 1120365 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| || || | | || | |||||||| || || Sbjct 1120366 ATTCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCAACT 1120425 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || ||||| || || ||||| || ||||| Sbjct 1120426 TCCAAGGTTATGGTTTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 1120472 >seq5 Length=11097736 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | || || ||| ||||| || || |||| Sbjct 4356999 GATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCG 4356940 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| ||||| || |||||||| || || ||||| ||||| ||| || ||| | | Sbjct 4356939 AAGATGAGACGTTGCTGGTCCGGCGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACA 4356880 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | || || ||||||| || | || || || || || ||||| Sbjct 4356879 TTG-TCGATGGTGTCAGAGGATTCGACCTCGAGGGTTATGGTCTTCCCCGTTAGGGTTTT 4356821 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 4356820 GACGAAGATCTGCAT 4356806 >seq13 Length=7441454 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||| |||||| | || || ||| || || || || |||| Sbjct 4972671 GACTCCTTCTGGATGTTATAGTCGGCTAGGGTCCGGCCGTCTTCAAGCTGCTTGCCGGCG 4972612 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || ||||| ||||||||||| || || ||||| ||||| ||| || || | Sbjct 4972611 AATATGAGACGTTGTTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACG 4972552 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| || || ||||| | || | || ||||| || || ||||| Sbjct 4972551 TTGTCGATGGTGTCGGAGGATTCGACCTCCAAGGTTATGGTCTTACCCGTTAGGGTTTTC 4972492 Query 138601 ACAAAAATCTGCATGGCT 138618 || || |||||||||||| Sbjct 4972491 ACGAAGATCTGCATGGCT 4972474 >seq1649 Length=3542 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||||||| ||||| | | ||||||||||||| ||||| ||||| | || | | Sbjct 798 CGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCTGCAAGTGTCCTCCCA 739 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || || || || || | | | || | | |||||||| || || ||||| || || Sbjct 738 TCTTCAAGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCAGGTGGGATACCCTCCTTA 679 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| || ||| | | || | ||||| | ||||||||| | || | Sbjct 678 TCTTGGATCTTGGCTTTGACGTTGTCAATTGTGTCAGAGCTCTCCACCTCCAAAGTAATG 619 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||||||| || || |||||||||||||| Sbjct 618 GTTTTACCAGTCAAGGTCTTCACAAAAATCTGCAT 584 >seq9 Length=8984705 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/217 (70%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || || || | | |||||||||||||||||||||| || | || | Sbjct 7042453 CGCAACACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCTGCAAGGGTCTTCCCA 7042394 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 |||| || || ||||| | | | || || | ||| ||||| ||||| |||||||| ||| Sbjct 7042393 TCCTTAAGCTGCTTACCAGCAAAAATAAGCCTCTGCTGGTCTGGAGG-ATACCTTCATTG 7042335 Query 138520 TCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 || ||| |||| | || |||| || || |||| || || || | | || | Sbjct 7042334 TC-TTGAATTTTGGCCTTGACATTG-TCAACTGTGTTGGAGCTTTCAACTTGCAAAGTAA 7042277 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||||||||||| || || |||||||||||||| Sbjct 7042276 TGGTCTTACCAGTCAGCGTCTTCACAAAAATCTGCAT 7042240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496224721277280