Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq10 114 1e-20 seq4 113 4e-20 seq5 91.5 1e-13 seq14 87.8 2e-12 seq1649 86.0 6e-12 seq9 86.0 6e-12 seq2 84.2 2e-11 >seq10 Length=8461613 Score = 114 bits (126), Expect = 1e-20 Identities = 172/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | || || || || ||||| ||||||||||| |||||||| Sbjct 2239020 ATGCCCCCACGAAGCCTGAGGACAAGGTGGAGAGTTGACTCCTTTTGGATGTTATAATCA 2239079 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || |||| ||||| || ||| | || | || || ||||| || Sbjct 2239080 GCCAAAGTACGGCCGTCCTCCAGCTGTTTCCCGGCGAAGATGAGCCGCTGTTGGTCGGGA 2239139 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || ||||| |||| || | || | ||||||||| ||| Sbjct 2239140 GGGATGCCTTCCTTGTCCTGGATTTTGGCCTTGA-CGTTGTCAATCGTGTCGGAACTCTC 2239198 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACC 45349 ||||||||| || | ||||||||||| | |||||| || || |||||||| ||| || Sbjct 2239199 GACTTCGAGGGTGATGGTTTTGCCGGTCAAAGTTTTGACGAAGATTTGCATACCGCCACG 2239258 Query 45350 AA 45351 || Sbjct 2239259 AA 2239260 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || |||||||| || ||||| || |||||||||||||| || || ||||| Sbjct 2238792 ATTCCTCCACGAAGCCTCAAAACAAGATGAAGGGTTGATTCCTTTTGTATGTTGTAATCA 2238851 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | || || || ||| | ||||| ||||| ||||| || Sbjct 2238852 GCCAAGGTCCTCCCGTCCTCAAGCTGCTTCCCGGCGAAGATCAAACGTTGTTGGTCTGGT 2238911 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| |||||||| | | || | | | || | || | ||||| || ||| Sbjct 2238912 GGGATCCCTTCCTTATCTTGGA-TCTTGGCCTTAACGTTATCAATCGTGTCCGAGCTCTC 2238970 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | || | || || || || | ||||| ||||| |||||||| Sbjct 2238971 GACCTCCAAGGTTATTGTCTTTCCTGTCAAGGTTTTGACAAAGATTTGCAT 2239021 >seq4 Length=12062019 Score = 113 bits (124), Expect = 4e-20 Identities = 170/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| ||||| | ||| || || || ||||||||||| |||||||| || ||| Sbjct 4154678 ATGCCTCCGCGCAGCCTGAGCACAAGGTGAAGGGTTGATTCCTTCTGGATATTGTAGTCG 4154619 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | |||||||| || |||||||| Sbjct 4154618 GCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGTTGGTCCGGA 4154559 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || ||||| | | || | | | || | || | ||||| || || Sbjct 4154558 GGGATGCCCTCCTTGTCTTGGA-TCTTGGCCTTAACGTTGTCGATCGTGTCAGAGCTTTC 4154500 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||| ||||| | || ||||||||||| ||||| || || || ||||| ||| || Sbjct 4154499 GACTTCAAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATACCGCCAC 4154441 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || ||||||||||||||||| ||||| Sbjct 4154450 ATACCGCCACGGAGACGGAGTACCAGGTGGAGAGTCGATTCCTTTTGGATATTGTAATCC 4154391 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| || || | ||| || || ||| | ||||| || || || || || Sbjct 4154390 GCAAGGGTTCGGCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAAGCGCTGTTGATCAGGA 4154331 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || ||||| || || |||| || | || | |||||| || ||| Sbjct 4154330 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCTGAGCTCTC 4154272 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | ||||||||||||| ||||| || || || |||||| Sbjct 4154271 CACCTCGAGGGTGATGGTTTTGCCGGTTAAGGTTTTCACGAAGATCTGCATC 4154220 >seq5 Length=11097736 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || |||||||| ||||| || || ||| | ||| || || Sbjct 4357014 ACGAGGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCTAAGGTGCGGCCGTCTTCG 4356955 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | || | ||||||||||||||||| || ||||| || ||||| Sbjct 4356954 AGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCCGGCGGGATTCCTTCCTTGTCTTGG 4356895 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| || | |||||| || || ||||| ||||| || | || || Sbjct 4356894 ATCTTGGCTTTGACATTGTCGATGGTGTCAGAGGATTCGACCTCGAGGGTTATGGTCTTC 4356835 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| || || || |||||| Sbjct 4356834 CCCGTTAGGGTTTTGACGAAGATCTGCATC 4356805 >seq14 Length=6982396 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || || || || || ||||| ||||||||||| || ||||| Sbjct 1120243 ATCCCACCACGGAGACGTAAGACCAGGTGGAGGGTTGACTCCTTTTGGATGTTGTAATCC 1120302 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||| || || || | || | | |||||||||||| Sbjct 1120303 GCCAAAGTTCGGCCGTCCTCGAGTTGCTTCCCAGCAAAGATAAGCCTTTGCTGGTCCGGG 1120362 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| |||||||| || || || || || | || | || | ||||||||| || Sbjct 1120363 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAGCTTTC 1120421 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | || | |||||||| || || || || ||||| ||||||||| Sbjct 1120422 AACTTCCAAGGTTATGGTTTTGCCCGTCAGGGTCTTGACAAAGATTTGCATC 1120473 >seq1649 Length=3542 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || | ||| || | |||||| ||||| ||||||||||| ||||| || Sbjct 813 ATCCCTCCTCTAAGGCGCAAAACCAAATGCAGGGTTGACTCCTTTTGGATGTTATAGTCT 754 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || || || || | ||||| | ||| ||||| || Sbjct 753 GCAAGTGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTTTGTTGGTCAGGT 694 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || |||||||| || || ||||| || | || | ||||| || ||| Sbjct 693 GGGATACCCTCCTTATCTTGGATCTTGGCTTTGA-CGTTGTCAATTGTGTCAGAGCTCTC 635 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| ||||| || || | || || |||||||| ||||| Sbjct 634 CACCTCCAAAGTAATGGTTTTACCAGTCAAGGTCTTCACAAAAATCTGCAT 584 >seq9 Length=8984705 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | || ||| | || || ||||| || ||||||||||| ||||| Sbjct 7053081 ATTCCTCCACGCAGACGCAGCACCAAGTGGAGGGTTGACTCTTTTTGGATATTGTAATCT 7053022 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| ||||| || || |||||| | || || || || Sbjct 7053021 GCAAGTGTCCTCCCATCCTCCAACTGTTTGCCAGCAAATATCAGCCTCTGTTGATCTGGA 7052962 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || || || || ||| | || | ||| || ||| ||| Sbjct 7052961 GGGATACCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATGGTATCAGAACTCTCA 7052902 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| || || || || || || || |||||||||||||| Sbjct 7052901 ACTTCCAAGGTAATAGTCTTTCCAGTGAGGGTCTTGACAAAAATTTGCAT 7052852 >seq2 Length=14367614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| | || || || |||||||||||||||||||| || || ||| | ||| Sbjct 9074945 CAACACCAAGTGAAGGGTAGATTCCTTTTGGATATTATAGTCAGCGAGAGTTCTCCCATC 9074886 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | || || || || | || | | ||||||||| || || || || || ||||| Sbjct 9074885 TTCAAGCTGCTTGCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTATC 9074826 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||| || ||| || | || | ||| || ||| ||| || || | || | || Sbjct 9074825 TTGGATCTTTGCCTTCACATTATCAATGGTATCTGAACTCTCAACCTCCAATGTGATAGT 9074766 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| || ||||||||||||||| Sbjct 9074765 CTTTCCCGTAAGAGTCTTCACAAAAATTTGCATC 9074732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451968881657040